View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_117 (Length: 212)
Name: NF14784_low_117
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_117 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 22589954 - 22589751
Alignment:
| Q |
9 |
aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccggaattcctgctgccgtgttagaaaac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22589954 |
aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccggaattcctgccgccgtgttagaaaac |
22589855 |
T |
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| Q |
109 |
tcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaatttaatatttgtgaaatgaatattgcatag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22589854 |
tcatttgtagaattttatcctttttcttcatttgggtgagttctatcgttttgctcttctctaaaaacaatttaatatttgtgaaatgaatattgcatag |
22589755 |
T |
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| Q |
209 |
aaga |
212 |
Q |
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|||| |
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| T |
22589754 |
aaga |
22589751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 30935119 - 30935321
Alignment:
| Q |
9 |
aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccggaattcctgctgccgtgttagaaaac |
108 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||| |
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| T |
30935119 |
aacccccaatttatttcgggattcgagaacttttaccggcgaccaccgcgttggaaacctcagcagccgtatcggaattcctcc-gccgtgtcagaaaac |
30935217 |
T |
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| Q |
109 |
tcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaatttaatatttgtgaaatgaatattgcatag |
208 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935218 |
tcaattgtagcattttatcctttttcttcatttgggtgagttctatctttttgctcttctctaaaaacaatttaatatttgtgaaatgaatattgcatag |
30935317 |
T |
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| Q |
209 |
aaga |
212 |
Q |
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|||| |
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| T |
30935318 |
aaga |
30935321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 34548354 - 34548315
Alignment:
| Q |
171 |
aaaaacaatttaatatttgtgaaatgaatattgcatagaa |
210 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
34548354 |
aaaaacagattaatatttgtgaaatgaatattgcatagaa |
34548315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 27308268 - 27308223
Alignment:
| Q |
11 |
cccccaatttatttcgggattggagaactttgaccggcgaccaccg |
56 |
Q |
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| T |
27308268 |
cccccaatttatttcgggattgaagaactttcaccgtcaaccaccg |
27308223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 19278920 - 19278956
Alignment:
| Q |
20 |
tatttcgggattggagaactttgaccggcgaccaccg |
56 |
Q |
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| T |
19278920 |
tattttgggattggagaactttcaccggcgaccaccg |
19278956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 13077503 - 13077463
Alignment:
| Q |
17 |
atttatttcgggattggagaactttgaccggcgaccaccgc |
57 |
Q |
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| T |
13077503 |
atttattttgggatcggagaactttcaccggcgaccaccgc |
13077463 |
T |
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