View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_12 (Length: 483)

Name: NF14784_low_12
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_12
NF14784_low_12
[»] chr2 (6 HSPs)
chr2 (20-420)||(615103-615503)
chr2 (337-410)||(41514956-41515029)
chr2 (337-409)||(5197850-5197922)
chr2 (338-410)||(38695375-38695447)
chr2 (338-409)||(4824236-4824307)
chr2 (337-410)||(41702218-41702291)
[»] chr8 (7 HSPs)
chr8 (337-410)||(10739711-10739784)
chr8 (337-410)||(35485392-35485465)
chr8 (337-410)||(36100759-36100832)
chr8 (338-410)||(9819669-9819741)
chr8 (337-410)||(36020482-36020555)
chr8 (339-410)||(6057515-6057586)
chr8 (268-315)||(20107847-20107894)
[»] chr5 (3 HSPs)
chr5 (337-410)||(42461226-42461299)
chr5 (337-409)||(12694512-12694584)
chr5 (340-409)||(12694216-12694285)
[»] chr4 (2 HSPs)
chr4 (337-410)||(30514362-30514435)
chr4 (338-410)||(38872578-38872650)
[»] chr3 (3 HSPs)
chr3 (337-410)||(34575494-34575567)
chr3 (337-409)||(24833093-24833165)
chr3 (337-409)||(49766563-49766635)
[»] chr1 (3 HSPs)
chr1 (337-410)||(23775165-23775238)
chr1 (338-410)||(43467536-43467608)
chr1 (341-407)||(43466644-43466710)
[»] scaffold0350 (1 HSPs)
scaffold0350 (339-410)||(16940-17011)
[»] scaffold0016 (1 HSPs)
scaffold0016 (356-399)||(38511-38554)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 615103 - 615503
Alignment:
Q  20 cgaccctccaaaacggattattttatttgattgtttcaatcaagtgctactaacaacattgcaagaccagatgcaccgtaggttagcaactaacaacata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  615103 cgaccctccaaaacggattattttatttgattgtttcaatcaagtgctactaacaacattgcaagaccagatgcaccgtaggttagctactaacaacata 615202  T
Q  120 tttcttttatttatccaaaaagaaactatgattattttatggatggttctttcttattttatgcaccgtagttcattaaataccaaagctcaagaatatt 219  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  615203 tttcttttatttatccaaaaagaaactaagattattttatggacggttttttcttattttatgcaccgtagttcattaaataccaaagctcaagaatatt 615302  T
Q  220 tgactcgtaatgataatcttcatagtagtnnnnnnngatacaaagccattgatatggaaaggatccttctcaagcaaactgatatatcagtagaaaatta 319  Q
    ||| |||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  615303 tgagtcgtaatgataatcttcatagtagtaaaaaaagatataaagccattgatatggaaaggatccttctcaagcaaactgatatatcagtagaaaatta 615402  T
Q  320 gaatttatgtatcaagcagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatcatttttaa 419  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  615403 gaatttatgtctcaagtagcgtttgtagtccaacggttaggataattgccttccaagcaatagatccgggttcgactcccggcaaacgcagcatttttaa 615502  T
Q  420 t 420  Q
    |    
T  615503 t 615503  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 41514956 - 41515029
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514956 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 41515029  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 5197922 - 5197850
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197922 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 5197850  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 38695375 - 38695447
Alignment:
Q  338 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38695375 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 38695447  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 4824307 - 4824236
Alignment:
Q  338 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4824307 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 4824236  T

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Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 41702291 - 41702218
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41702291 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggtttgactcccggcaaacgcat 41702218  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 10739711 - 10739784
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10739711 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 10739784  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 35485392 - 35485465
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35485392 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 35485465  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 36100832 - 36100759
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100832 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 36100759  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 9819741 - 9819669
Alignment:
Q  338 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9819741 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 9819669  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 36020555 - 36020482
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  36020555 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcctggcaaacgcat 36020482  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 6057586 - 6057515
Alignment:
Q  339 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  6057586 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgcat 6057515  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 20107847 - 20107894
Alignment:
Q  268 ttgatatggaaaggatccttctcaagcaaactgatatatcagtagaaa 315  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||    
T  20107847 ttgatatggaaaggatccttctcaagcaaactgtattatcagtagaaa 20107894  T

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Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 42461299 - 42461226
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42461299 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 42461226  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 12694584 - 12694512
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694584 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 12694512  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 12694285 - 12694216
Alignment:
Q  340 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694285 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 12694216  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 30514362 - 30514435
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30514362 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 30514435  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 38872650 - 38872578
Alignment:
Q  338 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38872650 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 38872578  T

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Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 34575567 - 34575494
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575567 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 34575494  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 24833165 - 24833093
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24833165 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 24833093  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 49766635 - 49766563
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766635 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 49766563  T

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Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 23775165 - 23775238
Alignment:
Q  337 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23775165 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 23775238  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 43467536 - 43467608
Alignment:
Q  338 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43467536 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcccggcaaacgcat 43467608  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 43466644 - 43466710
Alignment:
Q  341 tttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacg 407  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| | ||| ||||||    
T  43466644 tttgtagtccaatggttaggataattgccttctaagcattagacccaggttcgatttccgacaaacg 43466710  T

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Target: scaffold0350 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 17011 - 16940
Alignment:
Q  339 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 410  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  17011 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgcat 16940  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 38554 - 38511
Alignment:
Q  356 ttaggataattgccttccaagcaatagacccgggttcgactccc 399  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  38554 ttaggacaattgccttccaagcaatagacccgggttcaactccc 38511  T

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