View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_122 (Length: 209)
Name: NF14784_low_122
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 23890770 - 23890945
Alignment:
| Q |
15 |
caaagggcagcacagaaactttagcttcatcagataaagctgaaatgagtgctgtattgaacaagaatgaagatagtgaagacacaggcacggaaacaaa |
114 |
Q |
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| T |
23890770 |
caaagggcagcacagaaactttagcttcatcagataaagctgaaatgagtgctgtattgaacaagaatgaagatagtgaagacacaggcacggaaacaaa |
23890869 |
T |
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| Q |
115 |
aggcagcacagaaactttagtttcatcagataaagctgaaacgagtgctacattgaacaagaatgttgcatagaat |
190 |
Q |
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| T |
23890870 |
gggccgcacagaaactttagtttcatcagataaagctgaaacgagtgctacattgaacaagaatgttgcatagaat |
23890945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 23890735 - 23890838
Alignment:
| Q |
76 |
caagaatgaagatagtgaagacacaggcacggaaacaaaaggcagcacagaaactttagtttcatcagataaagctgaaacgagtgctacattgaacaag |
175 |
Q |
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||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
23890735 |
caagaatgaggacagtgaagacacaggcacggaaacaaagggcagcacagaaactttagcttcatcagataaagctgaaatgagtgctgtattgaacaag |
23890834 |
T |
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| Q |
176 |
aatg |
179 |
Q |
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|||| |
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| T |
23890835 |
aatg |
23890838 |
T |
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