View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_13 (Length: 477)
Name: NF14784_low_13
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 50 - 456
Target Start/End: Original strand, 2690241 - 2690648
Alignment:
| Q |
50 |
ctattttaagtatgaattttattgtgtaattatttaagagtttattaga-ttttgacaaacgttatttcacagatattcactttcacttcctgccccttg |
148 |
Q |
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| T |
2690241 |
ctattttaagtatcaattttgttgtgtaattatttaagagtttattataattttgataaacgttattttacagatattcactttcacttcctgcccctta |
2690340 |
T |
|
| Q |
149 |
taattttggggtggtcattgtacccgnnnnnnnggaattcatcatcgaaagggatga-aagtacaattgtaccctttcatgtgtaattcactatattaat |
247 |
Q |
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||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
2690341 |
taattttggggtggtcattgtactcgaaaaaaagaaattcatcatcgaaagggatgataagtacaatcgtaccctttgatgtggaattcactatattaat |
2690440 |
T |
|
| Q |
248 |
ccattcaatgagaagatagcgtttgttcaaagtatgaaagagcaaagaattgaaattaaatagaaaactacaacaagtaaggatgaacatagacttgtat |
347 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| | |||||||||||| |
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| T |
2690441 |
ccattcaatgagaagattgcgttttttcaaagtatgaaagagcaaataattgaaattaaatcgaaaactgcaacaagtaaggagtagcatagacttgtaa |
2690540 |
T |
|
| Q |
348 |
tggatgtttcaatgactatagatgtaagtttaattgcataaatcttatattaatattattgcaatctcccttatacaactgaagcataacatatagctca |
447 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
2690541 |
tggatgtttcaatgactataaaggtaagtttaattgcataaatcttatattaatattattgcaatctcccttatacaa-tgaaacataacatctagctcg |
2690639 |
T |
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| Q |
448 |
acaaataga |
456 |
Q |
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||| ||||| |
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| T |
2690640 |
acagataga |
2690648 |
T |
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