View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_15 (Length: 472)
Name: NF14784_low_15
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 12552037 - 12551584
Alignment:
| Q |
19 |
ccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaattt |
118 |
Q |
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| T |
12552037 |
ccctctcttgatatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaattt |
12551938 |
T |
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| Q |
119 |
ccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtgacctac |
218 |
Q |
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| T |
12551937 |
ccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtgacctac |
12551838 |
T |
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| Q |
219 |
ccataataatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattatgtgggattttataggtgta |
318 |
Q |
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| T |
12551837 |
ccataataatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattatgtgggattttataggtgta |
12551738 |
T |
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| Q |
319 |
gtatgccatcatttttgctattannnnnnncttcaagaaattaacacgtatgatttgacatttgaggaagaagtgtcaaagaagcaacctagctagttag |
418 |
Q |
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| T |
12551737 |
gtatgccatcatttttgctattatttttttcttcaagaaattaacacgtatgagctgacatttgaggaagaagtgtcaaagaagcaacctagctagttag |
12551638 |
T |
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| Q |
419 |
agactattttggcatttttcagctatggagagaattttattttgttacaaaaat |
472 |
Q |
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| T |
12551637 |
agactattttggcatttttcagctatggagagaattttattttgttacaaaaat |
12551584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 1281395 - 1281336
Alignment:
| Q |
19 |
ccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccaca |
78 |
Q |
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| T |
1281395 |
ccctcttttaatatcaggacttaaataatttgtccatcttaacctacaactctttccaca |
1281336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 2590895 - 2590846
Alignment:
| Q |
32 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacct |
81 |
Q |
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| T |
2590895 |
tcaggccttaaataatttatccatctcaacctacaactcttaccacacct |
2590846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 33695409 - 33695345
Alignment:
| Q |
20 |
cctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctatt |
84 |
Q |
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| T |
33695409 |
cctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
33695345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 37962917 - 37962859
Alignment:
| Q |
32 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaacc |
90 |
Q |
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| T |
37962917 |
tcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacc |
37962859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 3910341 - 3910285
Alignment:
| Q |
157 |
atcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtga |
213 |
Q |
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| T |
3910341 |
atcttcttctggagtccatggacctttctttaaaccaactttgtcacaacatggtga |
3910285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 30007307 - 30007195
Alignment:
| Q |
20 |
cctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaatttc |
119 |
Q |
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| T |
30007307 |
cctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagctttggaagtgctctccaacttc |
30007208 |
T |
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| Q |
120 |
catggccatgttt |
132 |
Q |
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| T |
30007207 |
catggccatgttt |
30007195 |
T |
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