View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_16 (Length: 467)
Name: NF14784_low_16
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_16 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 224 - 467
Target Start/End: Original strand, 443394 - 443639
Alignment:
| Q |
224 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
323 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
443493 |
T |
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| Q |
324 |
ag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
421 |
Q |
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| T |
443494 |
agaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
443593 |
T |
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| Q |
422 |
ttaccttaggtagtttaagcctaattatgattatgtatttttattt |
467 |
Q |
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| T |
443594 |
ttaccttaggtagtttaagcctaattatgattatgtatttttattt |
443639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 443222 - 443400
Alignment:
| Q |
18 |
atgtcgtgctaa-tacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcatatactcatatcatatataacaatccctaaatt |
116 |
Q |
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| T |
443222 |
atgtcgtgctaagtacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcatatactcatatcatatataacaatccctaaatt |
443321 |
T |
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| Q |
117 |
tattattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
195 |
Q |
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| T |
443322 |
tatcattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
285 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
370 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
285 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
367 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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