View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_17 (Length: 467)
Name: NF14784_low_17
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 143 - 405
Target Start/End: Complemental strand, 47118435 - 47118170
Alignment:
| Q |
143 |
ttcttctctaactctgcttccacatatttttaaacaatgta---ttattcaaagctgcactacataattttgttgaaacaatacattgttaacataattc |
239 |
Q |
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| T |
47118435 |
ttcttctctaactctgcttccacatatttttaaacaatgtactattattcaaagctgcactacataattttgttgaaacaatacattgttaacataattc |
47118336 |
T |
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| Q |
240 |
aaaagacattggtgactnnnnnnnttagttaccgttatgattaagattaagttctgtcctgatcacaaacaacaatttaggaagcatttattttgttaag |
339 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47118335 |
aaaagacattggtgactaaaaaaattagtgaccgttatgattaagattaagttctgtcctgatcacaaacaacaatttaggaagcatttattttgttaag |
47118236 |
T |
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| Q |
340 |
aaaagtaactacttaatnnnnnnnnttcaggaactcgtttacatagtctaggatacattccttgct |
405 |
Q |
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||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
47118235 |
aaaagcaactacttaataaaaaaaattcaggaactcgtttacaaagtctaggatacattccttgct |
47118170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 5778106 - 5778218
Alignment:
| Q |
145 |
cttctctaactctgcttccacatattttt---aaacaatgtattattcaaagctgcactacataattttgttgaaa-caatacattgttaacataattca |
240 |
Q |
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| T |
5778106 |
cttctctaactctgcttccacatttttttttgaaacaacaaattattaaaagctataccacataattttgttgaaaacaatacattgttagcataattca |
5778205 |
T |
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| Q |
241 |
aaagacattggtg |
253 |
Q |
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| T |
5778206 |
aaagactttggtg |
5778218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 5797683 - 5797568
Alignment:
| Q |
145 |
cttctctaactctgcttccacatattttt------aaacaatgtattattcaaagctgcactacataattttgttgaaa-caatacattgttaacataat |
237 |
Q |
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||||||||||||||||||||||| ||||| |||||| ||||||| ||| || || ||||||||||||||||| ||||||||||||| |||||| |
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| T |
5797683 |
cttctctaactctgcttccacatttttttttgttgaaacaacatattattaaaaactataccacataattttgttgaaaacaatacattgttagcataat |
5797584 |
T |
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| Q |
238 |
tcaaaagacattggtg |
253 |
Q |
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| T |
5797583 |
tcaaaagactttggtg |
5797568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 5772472 - 5772583
Alignment:
| Q |
145 |
cttctctaactctgcttccaca-tatttttaaacaa---tgtattattcaaagctgcactacataattttgttg-aaacaatacattgttaacataattc |
239 |
Q |
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||||||||||||||||| |||| | ||||||||||| ||||||| |||||| || |||||||||||||| |||||| ||||||||| |||||||| |
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| T |
5772472 |
cttctctaactctgctttcacattttttttaaacaacatattattattaaaagctataccacataattttgttgaaaacaacacattgttagcataattc |
5772571 |
T |
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| Q |
240 |
aaaagacattgg |
251 |
Q |
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||||||| |||| |
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| T |
5772572 |
aaaagactttgg |
5772583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 5795882 - 5795922
Alignment:
| Q |
366 |
tcaggaactcgtttacatagtctaggatacattccttgctt |
406 |
Q |
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||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
5795882 |
tcaggaactcgtttacaaactctaggatacattacttgctt |
5795922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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