View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_18 (Length: 461)

Name: NF14784_low_18
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_18
NF14784_low_18
[»] chr8 (2 HSPs)
chr8 (1-144)||(43542796-43542938)
chr8 (386-418)||(8115738-8115770)
[»] chr3 (2 HSPs)
chr3 (386-441)||(4669812-4669867)
chr3 (389-430)||(3376890-3376931)
[»] chr6 (1 HSPs)
chr6 (386-440)||(32115622-32115676)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 43542796 - 43542938
Alignment:
Q  1 tcaagattaaactctaatgaaaatttacgacaaatataaaatataaataaaatcannnnnnnnnnnagattttaatttatacataacaaagtaannnnnn 100  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||           ||||||||||||||||||||||||||||          
T  43542796 tcaagtttaaactcttatgaaaatttacgacaaatat-aaatataaataaaatcatttttttttttagattttaatttatacataacaaagtaatttttt 43542894  T
Q  101 nnnattctaaaaagttagcaacgaaactcacaatctaaaatatt 144  Q
       |||||||||| ||||||| ||||||||||||| ||||||||    
T  43542895 tttattctaaaaatttagcaatgaaactcacaatccaaaatatt 43542938  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 8115770 - 8115738
Alignment:
Q  386 tccatgaatgttatgtttatgatgattgatttt 418  Q
    |||||||||||||||||||||||||||||||||    
T  8115770 tccatgaatgttatgtttatgatgattgatttt 8115738  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 4669812 - 4669867
Alignment:
Q  386 tccatgaatgttatgtttatgatgattgattttgttatttaaaaaagtttagcggc 441  Q
    |||||||||||| |||||| ||||||||||||||||||  ||||| |||| |||||    
T  4669812 tccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggc 4669867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 3376890 - 3376931
Alignment:
Q  389 atgaatgttatgtttatgatgattgattttgttatttaaaaa 430  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  3376890 atgaatgttgtgtttatgatgattgattttgtcatctaaaaa 3376931  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 32115676 - 32115622
Alignment:
Q  386 tccatgaatgttatgtttatgatgattgattttgttatttaaaaaagtttagcgg 440  Q
    |||||||||||| |||||| |||||||||||||| ||| |||||| || ||||||    
T  32115676 tccatgaatgttgtgtttacgatgattgattttgctatctaaaaaggtctagcgg 32115622  T

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