View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_2 (Length: 706)
Name: NF14784_low_2
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 183 - 690
Target Start/End: Original strand, 36835480 - 36835989
Alignment:
| Q |
183 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtagtaataattatg |
282 |
Q |
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| T |
36835480 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtaataataattatg |
36835579 |
T |
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| Q |
283 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
382 |
Q |
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| T |
36835580 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
36835679 |
T |
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| Q |
383 |
ctttgatgaaaatgtgatataaatttgcactct--actctctaggaatcctatgcagcatatgtgcacatgttgcagccatagttggagggatccaatat |
480 |
Q |
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| T |
36835680 |
ctttgatgaaaatgtgatataaatttgcactctctactctctaggaatcctatgcagcatatgtgcacatgttgcagccgtagttggatggatccaatat |
36835779 |
T |
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| Q |
481 |
gcatttagtggtgtattagatttagattttaagagactccatttcagatgagtttaatttattttaaatataaaatgcttatacggaaattgattgcata |
580 |
Q |
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| T |
36835780 |
gcatttagtggtgtattagatttagattttaagagactccatttcagatgagtttaatttattttaaatataaaatgcttatacggaaattgatcgcata |
36835879 |
T |
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| Q |
581 |
tttatcaacccaacaatcaaatgagttaaaattcagtctctttagctttgttaaggttttcaatagtgctgcttgaaagcatggatccatggttatttca |
680 |
Q |
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| T |
36835880 |
tttatcaacataacaatcaaatgagttaaaattcagtctctttagctttgttaaggttttcaacagtgctgcttgaaagcatggatccatggttatttca |
36835979 |
T |
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| Q |
681 |
ttttctatgt |
690 |
Q |
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| T |
36835980 |
ttttctatgt |
36835989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 36835305 - 36835399
Alignment:
| Q |
8 |
gagtgagatgaagaaaaaacgaagaaagtagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
102 |
Q |
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| T |
36835305 |
gagtgagatgaaggaaaaacgaagaaagtagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
36835399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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