View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_20 (Length: 448)

Name: NF14784_low_20
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_20
NF14784_low_20
[»] chr4 (4 HSPs)
chr4 (1-437)||(42268283-42268719)
chr4 (2-437)||(48699323-48699758)
chr4 (8-437)||(30947691-30948120)
chr4 (175-437)||(2001257-2001521)
[»] chr3 (3 HSPs)
chr3 (1-437)||(5820776-5821212)
chr3 (119-437)||(2814882-2815200)
chr3 (175-432)||(42587336-42587593)
[»] chr2 (2 HSPs)
chr2 (1-437)||(827859-828295)
chr2 (18-74)||(13842373-13842429)
[»] chr6 (4 HSPs)
chr6 (2-437)||(27876211-27876646)
chr6 (1-224)||(26978394-26978602)
chr6 (175-358)||(8481374-8481557)
chr6 (31-266)||(18148735-18148970)
[»] chr5 (2 HSPs)
chr5 (2-437)||(41720790-41721225)
chr5 (1-437)||(34354390-34354826)
[»] chr8 (2 HSPs)
chr8 (1-437)||(9441592-9442029)
chr8 (175-437)||(24596163-24596425)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 42268719 - 42268283
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268719 gtggctcgtcataacatagtctgattgccaagatggtttctgcgtttgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 42268620  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42268619 tgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttacttt 42268520  T
Q  201 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  42268519 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaa 42268420  T
Q  301 gaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatct 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  42268419 gaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaataatct 42268320  T
Q  401 actggctttcctttccacatctccatcggtgtcttca 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  42268319 actggctttcctttccacatctccatcggtgtcttca 42268283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 437
Target Start/End: Original strand, 48699323 - 48699758
Alignment:
Q  2 tggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48699323 tggcttgtcataacatagtctgattgccaagacggtttctgcgtctgacgcgttgatcgacgaacaccatcattgacatcatctggttcttgttcttcgt 48699422  T
Q  102 gcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttg 201  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48699423 gcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttg 48699522  T
Q  202 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  48699523 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaag 48699622  T
Q  302 aagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatcta 401  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48699623 aagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaagaataatcta 48699722  T
Q  402 ctggctttcctttccacatctccatcggtgtcttca 437  Q
    ||||||||||||||||||||||||||||||||||||    
T  48699723 ctggctttcctttccacatctccatcggtgtcttca 48699758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 30947691 - 30948120
Alignment:
Q  8 gtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgtgcacca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30947691 gtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgtgcaccg 30947790  T
Q  108 gttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttc 207  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30947791 attcagcttcagaagaatcactttctttggatttttcttctatctgcagaatagcagtctctttaaaagtgctgtcatttttctgctcactttgcagttc 30947890  T
Q  208 attttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaagaagata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  30947891 attttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaagaagata 30947990  T
Q  308 catttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947991 catttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggct 30948090  T
Q  408 ttcctttccacatctccatcggtgtcttca 437  Q
    ||||||||||||||||||| ||||||||||    
T  30948091 ttcctttccacatctccattggtgtcttca 30948120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 175 - 437
Target Start/End: Complemental strand, 2001521 - 2001257
Alignment:
Q  175 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacat--ccctgctaacaacaaccttgcgggcagtgggatcccacaggagat 272  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||| | |||||||||||||||| | |||    
T  2001521 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgat 2001422  T
Q  273 accccttaacattgtcaacataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggaca 372  Q
    ||||||| || |||||| ||||||||||||| ||||| || ||||||||||| || |  || ||||||||||||||||||| |||  ||||||||  |||    
T  2001421 accccttcacgttgtcagcataacccaagaatatacaatttctagactttggatctagttttgttctttcttgggagttgttcattgcgtacacaataca 2001322  T
Q  373 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttca 437  Q
     || || ||||  |  |||||||||||   ||||||||| ||||| |||||||| ||||| ||||    
T  2001321 tccgaacacatataaggaagaataatcaggtggctttccgttccaaatctccattggtgttttca 2001257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 5820776 - 5821212
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5820776 gtggctcgtcataacatagtctgattgccaagatggtttctgcgtttgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 5820875  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5820876 tgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttacttt 5820975  T
Q  201 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  5820976 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaa 5821075  T
Q  301 gaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatct 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5821076 gaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaataatct 5821175  T
Q  401 actggctttcctttccacatctccatcggtgtcttca 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  5821176 actggctttcctttccacatctccatcggtgtcttca 5821212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 119 - 437
Target Start/End: Original strand, 2814882 - 2815200
Alignment:
Q  119 gaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaa 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2814882 gaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaaatgctgtcatttttctgctcactttgcagttcattttctgcaa 2814981  T
Q  219 agactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaagaagatacatttcctaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  2814982 agactacatccctgctaacaacaaccttgcgggcagtgggaccccacaggcgataccccttaacattgtcagcataacccaagaagatacatttcttaga 2815081  T
Q  319 ctttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccac 418  Q
    ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  2815082 ctttgggtccaactttgttctttcttgagagttgtacatcacatacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccac 2815181  T
Q  419 atctccatcggtgtcttca 437  Q
    |||||||| || |||||||    
T  2815182 atctccataggagtcttca 2815200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 175 - 432
Target Start/End: Complemental strand, 42587593 - 42587336
Alignment:
Q  175 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagatac 274  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||| | |||||    
T  42587593 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgatac 42587494  T
Q  275 cccttaacattgtcaacataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaac 374  Q
    || || || |||||| ||||||||||||| |||||||| ||||||||||| || | ||| |||||||||||||||||||||||  ||||||||| ||| |    
T  42587493 cctttcacgttgtcagcataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatc 42587394  T
Q  375 caaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgt 432  Q
    | || ||||| |  |||||||||||   ||||||||| ||||| |||||||| |||||    
T  42587393 cgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgt 42587336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 828295 - 827859
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  828295 gtggctcgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 828196  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  828195 tgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttacttt 828096  T
Q  201 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaa 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  828095 gcagttcattttctgcaaagactagatccctgctaacaacaaccttgcgggtagtgggatcccacaggcgataccccttaacattgtcagcataacccaa 827996  T
Q  301 gaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatct 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  827995 gaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaagaataatct 827896  T
Q  401 actggctttcctttccacatctccatcggtgtcttca 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  827895 actggctttcctttccacatctccatcggtgtcttca 827859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 13842373 - 13842429
Alignment:
Q  18 agtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattat 74  Q
    ||||||||| | | |||||||| ||| |||||||| |||||||||||||||| ||||    
T  13842373 agtctgattactaggatggtttatgcatctgacgcattgatcgacgaacacctttat 13842429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 437
Target Start/End: Original strand, 27876211 - 27876646
Alignment:
Q  2 tggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27876211 tggcttgtcataacatagtctgattgccaagacggtttctgcgtctgacgcgttgatcgacgaacaccatcattgacatcatctggttcttgttcttcgt 27876310  T
Q  102 gcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttg 201  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27876311 gcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttg 27876410  T
Q  202 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  27876411 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaag 27876510  T
Q  302 aagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatcta 401  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27876511 aagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaagaataatcta 27876610  T
Q  402 ctggctttcctttccacatctccatcggtgtcttca 437  Q
    ||||||||||||||||||||||||||||||||||||    
T  27876611 ctggctttcctttccacatctccatcggtgtcttca 27876646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26978394 - 26978602
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        
T  26978394 gtggctcgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttctggttc---- 26978489  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26978490 -----------agcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttacttt 26978578  T
Q  201 gcagttcattttctgcaaagacta 224  Q
    ||||||||||||||||||||||||    
T  26978579 gcagttcattttctgcaaagacta 26978602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 8481374 - 8481557
Alignment:
Q  175 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagatac 274  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||   |||||||||||||| | |||||    
T  8481374 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatctctgccaacaacaagcttgcgaatagtgggatcccacaagcgatac 8481473  T
Q  275 cccttaacattgtcaacataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatc 358  Q
    ||||| |  ||||||  |||||||||||| ||||||||  |||||||||| ||   ||| ||||| ||||||||| ||||||||    
T  8481474 cccttcatcttgtcagtataacccaagaatatacattttttagactttggatctgtctttgttctgtcttgggagatgtacatc 8481557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 18148735 - 18148970
Alignment:
Q  31 agatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgtgcaccagttcagcttcagaagaatcactt 130  Q
    |||||||||||||| |||||  ||||||||||   |||||  ||||||  ||| |||||||||  | |||||| |   ||||||||||||||||||||||    
T  18148735 agatggtttctgcgcctgacatgttgatcgacaggcaccaccattgaccgcatttggttcttgcacatcgtgctctgattcagcttcagaagaatcactt 18148834  T
Q  131 tctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccc 230  Q
    || ||| ||||||||||||| ||||| || ||| |||||||  ||||| |||| ||||| |||||||| | ||  ||||||||| ||||||||||||||     
T  18148835 tccttgaatttttcttccatatgcactattgcaatctctttgaaagtgttgtcttttttatgctcactctacaactcattttctacaaagactacatcca 18148934  T
Q  231 tgctaacaacaaccttgcgggcagtgggatcccaca 266  Q
    || |||||||||||||||||| ||||| ||| ||||    
T  18148935 tgataacaacaaccttgcgggtagtggaatctcaca 18148970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 437
Target Start/End: Complemental strand, 41721225 - 41720790
Alignment:
Q  2 tggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcgt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41721225 tggcttgtcataacatagtctgattgccaagacggtttctgcgtctgacgcgttgatcgacgaacaccatcattgacatcatctggttcttgttcttcgt 41721126  T
Q  102 gcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcactttg 201  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41721125 gcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttg 41721026  T
Q  202 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  41721025 cagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaag 41720926  T
Q  302 aagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatcta 401  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41720925 aagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatcta 41720826  T
Q  402 ctggctttcctttccacatctccatcggtgtcttca 437  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41720825 ctggctttcctttccacatctccattggtgtcttca 41720790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 34354826 - 34354390
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||    
T  34354826 gtggcttgtcataacatagtctgattgccaagacggtttctgcgtctgacgcgttgatcgacgaacaccatcattgacatcatatggttcttgttctccg 34354727  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  34354726 tgcatcggttcagcttcagaagaatcactttctttggatttttcttccatctgcattatagcagtctctttagaagtgctgtcatttttctgctcacttt 34354627  T
Q  201 gcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataacccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  34354626 gcagttcattttctgcaaagactacatccctgctaacaataaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaa 34354527  T
Q  301 gaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatct 400  Q
    |||||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  34354526 gaagatacattttctgaactttgggtccaacttcgttctgtcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaataatct 34354427  T
Q  401 actggctttcctttccacatctccatcggtgtcttca 437  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34354426 actggctttcctttccacatctccattggtgtcttca 34354390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 9441592 - 9442029
Alignment:
Q  1 gtggcttgtcataacatagtctgattgccaagatggtttctgcgtctgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441592 gtggctcgtcataacatagtctgattgccaagatggtttctgcgtttgacgcgttgatcgacgaacaccattattgacatcatctggttcttgttcttcg 9441691  T
Q  101 tgcaccagttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgctcacttt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9441692 tgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttacttt 9441791  T
Q  201 gcagttcattttct-gcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagataccccttaacattgtcaacataaccca 299  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  9441792 gcagttcattttcttgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataaccca 9441891  T
Q  300 agaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatc 399  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9441892 agaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaataatc 9441991  T
Q  400 tactggctttcctttccacatctccatcggtgtcttca 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9441992 tactggctttcctttccacatctccatcggtgtcttca 9442029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 175 - 437
Target Start/End: Original strand, 24596163 - 24596425
Alignment:
Q  175 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggagatac 274  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||| | | |||||    
T  24596163 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccataagcgatac 24596262  T
Q  275 cccttaacattgtcaacataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaac 374  Q
    || || || |||||| ||||||||||||| |||||||| ||||||||||| || | ||| |||||||||||||||||||||||  ||||||||| ||| |    
T  24596263 cctttcacgttgtcagcataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatc 24596362  T
Q  375 caaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttca 437  Q
    | || ||||| |  |||||||||||   ||||||||| ||||| |||||||| ||||| ||||    
T  24596363 cgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgttttca 24596425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University