View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_21 (Length: 444)
Name: NF14784_low_21
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_21 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 20982082 - 20982329
Alignment:
| Q |
19 |
aatattctgtttgtgtgttacctttattaagtaattcattgcttggtgattgtaatttgtatttgttcccattgcatagagttgagatattattatgtga |
118 |
Q |
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| T |
20982082 |
aatattctgtttgtgttttacctttattaagtaattcattgcttggtgattgtaatttgtatttgttcccattgcatagagttgagatattattatgtga |
20982181 |
T |
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| Q |
119 |
catatagttaaggtcctagtaatatttcatatgtggttcaaattggattatatgccagcgttatgacttcgatgatgggcaaactgtaagtacttcggca |
218 |
Q |
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| T |
20982182 |
catatagttaaggtcctagtaatatttcatatgtggttcagattggattatatgccagcgttatgacttcgatgatgggcaaactgtaaatacttctgca |
20982281 |
T |
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| Q |
219 |
agtgttctctgagttttgaggtctactccgactttggtgagctctgga |
266 |
Q |
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| T |
20982282 |
agtgttctctgagttttgaggtctactccgactttggtgagctctgga |
20982329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 20982601 - 20982679
Alignment:
| Q |
359 |
tatttgtcgttagtactttcaatttcaagttttatatacttgacaatgaaattcgtcaaagtagaaataatattcttgg |
437 |
Q |
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| T |
20982601 |
tatttgttgttagtactttcaatttcaagttttatatacttgacaatgaaattcgtcaaagtagaaataatattgttgg |
20982679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 42054712 - 42054756
Alignment:
| Q |
388 |
ttttatatacttgacaatgaaattcgtcaaagtagaaataatatt |
432 |
Q |
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| T |
42054712 |
ttttatatacttgacaatgaaattcgtcgaagtggaaatattatt |
42054756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 49067342 - 49067295
Alignment:
| Q |
327 |
aattgaagaacagtgtgctgaggtaggtgatgtatttgtcgttagtac |
374 |
Q |
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| T |
49067342 |
aattgaagaacagtgtgctgaggtaggtggtatatttttcattagtac |
49067295 |
T |
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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 411
Target Start/End: Complemental strand, 53820 - 53790
Alignment:
| Q |
381 |
tttcaagttttatatacttgacaatgaaatt |
411 |
Q |
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| T |
53820 |
tttcaagttttatatacttgacaatgaaatt |
53790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 19244 - 19281
Alignment:
| Q |
388 |
ttttatatacttgacaatgaaattcgtcaaagtagaaa |
425 |
Q |
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| T |
19244 |
ttttatatatttgacaatgaaattcgttaaagtagaaa |
19281 |
T |
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