View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_23 (Length: 438)
Name: NF14784_low_23
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 40521181 - 40521603
Alignment:
| Q |
1 |
aaccttgttaatcaaataataaaaagttactcactaataaacattcattttcttaggatagagaatgcaatagatatacaatatacaattctatgtgtga |
100 |
Q |
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| T |
40521181 |
aaccttgttaatcaaacaataaaaagttactcactaataaaaattcattttcttaggatagagaatgcaatagatatacaatatacaattctatgtgtga |
40521280 |
T |
|
| Q |
101 |
tatatctatttgtacatatattttcaaatttacaatgattttttacatctatcacatccgattctttgacaaataaagtagagccggaatcatgtatact |
200 |
Q |
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| T |
40521281 |
tatatctatttgtacatatattttcaaatttacaatgatttttcacatctatcacatccgattctttgacaaataaagtagagccggaatcatgtatact |
40521380 |
T |
|
| Q |
201 |
tttctgtacaagtagaacaattcaacaaatatatttctgtttatctaaaacaataatgtatcatagtaaatgctacagagatgtagtagtgccaatacat |
300 |
Q |
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| T |
40521381 |
tttctgtacaagtagaacaattcaacaaatatatttctgtttatctaaaacaataatgtatcatagtaaatgctacagagatgtagtagtgccaatacat |
40521480 |
T |
|
| Q |
301 |
aatagaacgtgtatgctatcaagggaaactgatgttttccatgcaaaaggattccaaccgaggctcggataggtctaccatttcctcttcggatgcatgc |
400 |
Q |
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| T |
40521481 |
aatagaacgtgtatgctatcaagggaaactgatgttttccatgcaaaaggattccaaccgaggctcggataggtctaccatttcctcttcggatgcatgc |
40521580 |
T |
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| Q |
401 |
cacttctcaccttttgaagtcaa |
423 |
Q |
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| T |
40521581 |
cacttctcaccttttgaagtcaa |
40521603 |
T |
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Back To:
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 21603041 - 21602982
Alignment:
| Q |
340 |
catgcaaaaggattccaaccgaggctcggataggtctaccatttcctcttcggatgcatg |
399 |
Q |
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| T |
21603041 |
catgcaaaatgattcgaaccgaggctcggttatgtctacgatttcctcttctgatgcatg |
21602982 |
T |
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