View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_24 (Length: 412)
Name: NF14784_low_24
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 28926766 - 28927156
Alignment:
| Q |
1 |
cattttcattttatcagacaagtacagcatcaagaaaggaatccaatccttaagtaagcatctttaaaattttagagggaatatgctgcacatcaaatca |
100 |
Q |
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| T |
28926766 |
cattttcattttatcagacaagtacaacatcaagaaaggaatccaatccttaagtaagcatctttaaaattttagagggaatatgctgcacatcaaaaca |
28926865 |
T |
|
| Q |
101 |
gatacccaataaaaagaaaaccgaaagcaagaaatgaacgaaagactattccagaactcatgaacttaacgttttattcaacaacaggtgtaagggaaaa |
200 |
Q |
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| T |
28926866 |
gatacccaataaaaagaaaaccgaaagcaagaaatgaacgaaagactattccagaactcatcaacttaacgttttattcaacaacaggtgtaagggaaaa |
28926965 |
T |
|
| Q |
201 |
aatgcaaaggagttcgatatagaatcaaccttcaatcaaaccaataagggatactacatgggaatgaaatcaaataaaacaatactacttacaattgtgt |
300 |
Q |
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| T |
28926966 |
aatgcaaatgagttcgatatagaatcaacctccaatcaaaccaataaggga---tacatgggaatgaaatcaaataaaacaa---tacttacaattgtgt |
28927059 |
T |
|
| Q |
301 |
cacagaccagattgcaagcattgaaataaacaaccagaaatttccagggaacattgtatgagtatttatcataacacattctatagagcatccattt |
397 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28927060 |
cacagaccagatcgcaagcattgaaataaacaaccagaaatttccagggaacattgtatgagtatttatcataacacattctatagagcatccattt |
28927156 |
T |
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