View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_low_26 (Length: 411)
Name: NF14784_low_26
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_26 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 1884839 - 1884451
Alignment:
| Q |
16 |
ctttgttctttagcttgaagacttgaagtttcgtctctagttccacctgctacaatcatgtgaagtccaccgccgcctttaatccagctaccgctaccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884839 |
ctttgttctttagcttgaagacttgaagtttcgtctctagttccacctgctacaatcatgtgaagtccaccgccgcctttaatccagctaccgctaccac |
1884740 |
T |
|
| Q |
116 |
tactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaaccaacccttgtagccatttagttgcataatgcattat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1884739 |
tactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaaccaactcttgtagccatttagttgcataatgcattat |
1884640 |
T |
|
| Q |
216 |
tgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884639 |
tgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccac |
1884540 |
T |
|
| Q |
316 |
caatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatcttggacttgaaatttttgatgatgt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884539 |
caatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatcttggacttgaaatttttgatgatgt |
1884451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 203 - 367
Target Start/End: Original strand, 1266390 - 1266554
Alignment:
| Q |
203 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
302 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
|
|
| T |
1266390 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
1266489 |
T |
|
| Q |
303 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
367 |
Q |
| |
|
|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
1266490 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
1266554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 369
Target Start/End: Complemental strand, 30729416 - 30729310
Alignment:
| Q |
263 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
362 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||| |||||| ||||||| |||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
30729416 |
taataactctaacaaagtgatcaatcctaagaatcggcgcattatcaaacattcaatcagtaggagctagcccattcctactgggacttgtatctttcat |
30729317 |
T |
|
| Q |
363 |
atcatta |
369 |
Q |
| |
|
||||||| |
|
|
| T |
30729316 |
atcatta |
30729310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 188 - 362
Target Start/End: Original strand, 37214575 - 37214749
Alignment:
| Q |
188 |
gtagccatttagttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37214575 |
gtagccatttagttgcataatgcattattccagcaccaatcagttcaaatctcatgccttttaccttaatagcagtaatgactctaacaaagtgatcaat |
37214674 |
T |
|
| Q |
288 |
ccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
362 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
37214675 |
cctaaggattgaaacatcttcaaaccaccaatcaggaggaactagctgattcctactcgggcttgagtctttcat |
37214749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 367
Target Start/End: Complemental strand, 20569 - 20405
Alignment:
| Q |
203 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
302 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||| ||||| ||||| ||| |||| ||||||||||||||| |||||| ||| |||| || |
|
|
| T |
20569 |
cataatgcatatttgcagcatcatttaattcaaatctcattccatttacattaatggcaataataactctaacaaagtgaccaatcctaagaattggcac |
20470 |
T |
|
| Q |
303 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
367 |
Q |
| |
|
|||||||||| | ||||||| | ||||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
20469 |
atcttcaaacaatcaatcagaatgaactagctgattcctgcttgaacttttatctttcatatcat |
20405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 203 - 367
Target Start/End: Complemental strand, 45312 - 45148
Alignment:
| Q |
203 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
302 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
|
|
| T |
45312 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
45213 |
T |
|
| Q |
303 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
367 |
Q |
| |
|
|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
45212 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
45148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 16140559 - 16140458
Alignment:
| Q |
263 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
362 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||||||||||| |||||||| |||| |||| |||||| || || |||||||||||||| |
|
|
| T |
16140559 |
taataactctaacaaagtgatcaatcccaagaatcaatgcatcttcaaacatccaatcagaaggagctagcccattcctgctaggtcttgtatctttcat |
16140460 |
T |
|
| Q |
363 |
at |
364 |
Q |
| |
|
|| |
|
|
| T |
16140459 |
at |
16140458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University