View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_27 (Length: 410)
Name: NF14784_low_27
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 40402509 - 40402890
Alignment:
| Q |
14 |
atcatcttaatgagaatagttgtattttttatgggtcttttttacgtcgataaatagattggttatttggttacacaacatctatttcattaccaccact |
113 |
Q |
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| T |
40402509 |
atcatcttaatgagaatagttgtgttttttacgggtcttttttacctcgataaatagattggttatttggttacacaacatctatttcattaccaccact |
40402608 |
T |
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| Q |
114 |
cctattcgtactcattctcatcctaagatgagcgtcaaaataaagcaaaaaagtgttatccaactaggccaaccacttcgatccaccctggatcaggaga |
213 |
Q |
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| T |
40402609 |
cctattcctactcattctcatcctaagatgagcgtcaaaataaagcaaaaaagtgctatccaactaggccaacctcttcgacccaccctggatcaggaga |
40402708 |
T |
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| Q |
214 |
taaattgttacccacaatatcatttttaaactccttcagtgttccaattaatacgtaccgattacaccgaaataaaattccgtacactcaaaatcattca |
313 |
Q |
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||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
40402709 |
taaattgttacccacaatatcgttcttaaactccttcaatgttccaattaatacgtacagattacaccgaaataaaattccatacactcaaaatcattca |
40402808 |
T |
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| Q |
314 |
catagtaatgatatgcgtaactaaattatttaagtttaagtggttaatcgacgatcgtttgagaaaccttgaatttaaattt |
395 |
Q |
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| T |
40402809 |
catagtaatgatatgcgtaaccaaattatttaagtttaagtggttaattgacgatcgtttgagaaaccttgagtttaaattt |
40402890 |
T |
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