View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_28 (Length: 410)
Name: NF14784_low_28
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 44 - 409
Target Start/End: Original strand, 37721887 - 37722253
Alignment:
| Q |
44 |
atggggtctctacagggatggaatgggaggnnnnnnntatagacaaattgagtgacgagaagtaaagaagttctgaccccttgacctctgcctcgtctca |
143 |
Q |
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| T |
37721887 |
atggggtctctacagggatggaatgggaggaaaaaaatatagacaaattgagtgacgagaagtaaagaagttctgaccccttgacctctgcctcgtctca |
37721986 |
T |
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| Q |
144 |
ttgacatcccacttcactttacattccattccatgtgagttccacattttcttaattcaaattaagtagggagagagggaggttggatgatggatgaatg |
243 |
Q |
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| T |
37721987 |
ttgacatcccacttcactttacattccattccatgtgagttccacattttcttaattcaaattaagtagggagagagggaggttggatgatggatgaatg |
37722086 |
T |
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| Q |
244 |
tgtgtctactaaatatttttaggatcatcttaaacaatttgaatatcatgttttaatcttaaaaagtatgtctctaataaaaac-aagtatacaaaattc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37722087 |
tgtgtctactaaatatttttaggatcatcttaaacaatttgaatatcatgttttaatcttaaaaagtatgtctctaataaaaacaaagtatacaaaattc |
37722186 |
T |
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| Q |
343 |
aaagagccattttttgtttaactcttatttggattcacttattttaagtttatatagtattatctac |
409 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
37722187 |
aaagagccattttttgtttagctcttatttggattcgcttattttaaacttatatagtcttatctac |
37722253 |
T |
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