View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_3 (Length: 641)

Name: NF14784_low_3
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_3
NF14784_low_3
[»] chr7 (9 HSPs)
chr7 (328-529)||(48894388-48894593)
chr7 (1-164)||(48894064-48894227)
chr7 (532-625)||(48894933-48895026)
chr7 (66-164)||(47926898-47926996)
chr7 (176-267)||(48108016-48108107)
chr7 (413-528)||(48107749-48107864)
chr7 (321-407)||(48571508-48571594)
chr7 (222-255)||(47051810-47051843)
chr7 (485-525)||(48571372-48571412)
[»] chr1 (2 HSPs)
chr1 (50-165)||(50458657-50458772)
chr1 (198-248)||(50459100-50459150)
[»] chr5 (1 HSPs)
chr5 (200-256)||(39403419-39403475)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 328 - 529
Target Start/End: Original strand, 48894388 - 48894593
Alignment:
Q  328 taaacttacttcattgaagctaggttgccttgaactc----actcatttggaggacgttttggatactttgaacttcaatacccgattgttgaattctct 423  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  48894388 taaacttacttcattgaagctaggttgccttgaactcactcactcatttggaggacgctttggatactttgaactttaatacccgattgttgaattctct 48894487  T
Q  424 atttcattgaagcaagagcttaatacacttgttgctacttgtgcaacnnnnnnncctgaacttgagattatgcatgtgaccgtattttcaatggttagtt 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||    
T  48894488 atttcattgaagcaagagcttaatacacttgttgctacttgtgcaactttttttcctgaacttgagattatgcatgtgaccatattttcaatggttagtt 48894587  T
Q  524 ataaag 529  Q
    ||||||    
T  48894588 ataaag 48894593  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 48894064 - 48894227
Alignment:
Q  1 tcattgaagtccttaatacttctactatatcatctggagaaacgcgtcaatttggatatgagtagggatgaatttgtaaaacgagtagatccatttgtca 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48894064 tcattgaagtccttaatacttctactatatcacctggagaaacgcgtcaatttggatatgagtagggatgaatttgtaaaacgagtagatccatttgtca 48894163  T
Q  101 agaattttcaaggcacaaaaattgattatttcatagtgagcttctatttagactgtgaacaaag 164  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  48894164 agaattttcaaggcacaaaaattgattcttttatagtgagcttctatttagactgtgaacaaag 48894227  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 532 - 625
Target Start/End: Original strand, 48894933 - 48895026
Alignment:
Q  532 ttgaaagagtgatctatatatattatatttctcagtcttttgattgtattttgaatcttactattttattcaggttacaacttccgtcaatatt 625  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48894933 ttgaaaaagtgatctatatatattatatttctcagtcttttgattgtattttgaatcttactattttattcaggttacaacttccgtcaatatt 48895026  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 47926898 - 47926996
Alignment:
Q  66 ggatgaatttgtaaaacgagtagatccatttgtcaagaattttcaaggcacaaaaattgattatttcatagtgagcttctatttagactgtgaacaaag 164  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||   ||  ||| |||| ||||||||||||||||| | |||||||||||    
T  47926898 ggatgaatttgtaaaacgagtagatcaatttgtcaagaattttcctggcacagtgatcaattctttcctagtgagcttctatttaaattgtgaacaaag 47926996  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 48108107 - 48108016
Alignment:
Q  176 aagaactttgtttaattttctatgagttcaaatcatcatttccaaagatagtaagttcatccttatgtcatctcaaggttatagggtgctat 267  Q
    |||| ||||| ||| |||| | ||| || ||||||| | | ||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  48108107 aagagctttgcttacttttttgtgaattgaaatcattaatgccagagatagtaagttcatctctatgtcatctcaaggctatagggtgctat 48108016  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 48107864 - 48107749
Alignment:
Q  413 ttgaattctctatttcattgaagcaagagcttaatacacttgttgctacttgtgcaacnnnnnnncctgaacttgagattatgcatgtgaccgtattttc 512  Q
    |||||||||  ||||||||||| |||||||||||||||  |||||||   ||||||||       ||||||||||||||||||||  ||| |  ||| ||    
T  48107864 ttgaattcttcatttcattgaaacaagagcttaatacatatgttgctttatgtgcaactttttttcctgaacttgagattatgcagttgagcacattatc 48107765  T
Q  513 aatggttagttataaa 528  Q
    |||||||||| |||||    
T  48107764 aatggttagtcataaa 48107749  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 48571594 - 48571508
Alignment:
Q  321 attgccttaaacttacttcattgaagctaggttgccttgaactcactcatttggaggacgttttggatactttgaacttcaataccc 407  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||   |   || ||| |||||||||||||||||| |||||||    
T  48571594 attgccttaaacttacttcattggagctagattctcttgaactcacttcatccaagaacggtttggatactttgaactttaataccc 48571508  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 47051843 - 47051810
Alignment:
Q  222 gatagtaagttcatccttatgtcatctcaaggtt 255  Q
    ||||||||||||||||||||||||||||||||||    
T  47051843 gatagtaagttcatccttatgtcatctcaaggtt 47051810  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 48571412 - 48571372
Alignment:
Q  485 ttgagattatgcatgtgaccgtattttcaatggttagttat 525  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  48571412 ttgagattatacatgtgaccatattttcaatggttagttat 48571372  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 50458657 - 50458772
Alignment:
Q  50 atttggatatgagtagggatgaatttgtaaaacgagtagatccatttgtcaagaattttcaaggcacaaaaattgattatttcatagtgagcttctattt 149  Q
    |||| ||| |||||||||||||||||||||| |||||||| |  ||||||||||||||| |||||||||| ||||||| |||| ||||||  || |||||    
T  50458657 attttgatttgagtagggatgaatttgtaaatcgagtagaccggtttgtcaagaattttgaaggcacaaatattgattctttcgtagtgaatttttattt 50458756  T
Q  150 agactgtgaacaaagt 165  Q
    ||| ||||||||||||    
T  50458757 agattgtgaacaaagt 50458772  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 50459100 - 50459150
Alignment:
Q  198 tgagttcaaatcatcatttccaaagatagtaagttcatccttatgtcatct 248  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||| ||||    
T  50459100 tgagttcaaatcatcaatgccaaagatagtgagttcatccttgtgttatct 50459150  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 39403419 - 39403475
Alignment:
Q  200 agttcaaatcatcatttccaaagatagtaagttcatccttatgtcatctcaaggtta 256  Q
    |||| |||||||||   |||||||| ||||||||||| ||||| |||||||||||||    
T  39403419 agtttaaatcatcaacaccaaagatcgtaagttcatctttatgccatctcaaggtta 39403475  T

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