View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_30 (Length: 408)
Name: NF14784_low_30
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 157 - 392
Target Start/End: Complemental strand, 21909124 - 21908889
Alignment:
| Q |
157 |
gagtgcaatgcatacaaatacaatcaaatttagacaccaaataaacgtcaatcaaatggtgtagcttctaaagtgtattgacaaataccatcaatacacg |
256 |
Q |
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| T |
21909124 |
gagtgcaatgcatataaatacaattaaatttagacaccaaataaacatcaatcaaatggtgtagcttctaaagtgtattgacaaataccatcaatacacg |
21909025 |
T |
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| Q |
257 |
ttaaaagtagaggttttttgaccttgtgacaatcactgtcagaaacacacggaattttagctacattgtcaaataagaagaaaaaatgttagaaaattgt |
356 |
Q |
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| T |
21909024 |
ttaaaagtagaggttttttgaccttgtgacaatcactgtcagaaacacatggaattttagctacattgtcaagtaagaagaaaaaatgttagaaaattgt |
21908925 |
T |
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| Q |
357 |
gataagtgttgtgcataagataaaattagaaaattg |
392 |
Q |
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| T |
21908924 |
gataagtgttgtgcataagataaaattagaaaattg |
21908889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 21909271 - 21909176
Alignment:
| Q |
11 |
agaacatattattaaaacttcataaatagagnnnnnnnnnt--taggaggactaggccaaaacccaagagaacaaatattacagataagtgtctcat |
105 |
Q |
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| T |
21909271 |
agaacatattattaaaacttcataaatagagaaaaaaaaatcttagg-ggactagaccaaaacccaagagaacaaatattacaaacaagtgtctcat |
21909176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 31965336 - 31965279
Alignment:
| Q |
284 |
gacaatcactgtcagaaacacacggaattttagctacattgtcaaataagaagaaaaa |
341 |
Q |
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| T |
31965336 |
gacaatcatagtcagaaacacatggaatgcgagctgcattgtcaaataagaagaaaaa |
31965279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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