View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_33 (Length: 397)
Name: NF14784_low_33
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 10691327 - 10690942
Alignment:
| Q |
12 |
attattcttacaccaaaataagtgacaccaacctgataaaatacaatatcaatatcaaaagcagaaactacattttgtagtttaccttttaaacatttct |
111 |
Q |
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| T |
10691327 |
attatacttacaccaaaataagtgacaccaacctgattaaatacaatatcaatatcaaaagcagaaactacattttgtagtttaccttttaaacatttct |
10691228 |
T |
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| Q |
112 |
aatacagttaaaatcaaccaaaagacttaacaattgctatcaaagtgaaagtagcattcaataaaagagtatatctggtgtcaaaaaacccaccatttaa |
211 |
Q |
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| T |
10691227 |
aatacagttaaaatcaaccaaaagacttaacaattgctatcaaagtgaacgtagcattcaataaaagagtatatcttgtgtcaaaaaacccaccatttaa |
10691128 |
T |
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| Q |
212 |
aacccattccgacttgttgctggtgtttattttacgcataattgtaatttgctcctctttatagtcccccctcaaggtaatcttaatgtgcccagaatct |
311 |
Q |
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| T |
10691127 |
aacccattccgacttgttgctagtgtttattttacgcataattgtaatttgctcctctttatggtcccccctcaaggtaatcttaatgtgcccagaatct |
10691028 |
T |
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| Q |
312 |
tctccccgcttcacaaatgcctgaatacttgtggctcgcccaagcaactgcagaaagtcgtatgaaatggttcaaaaataaattct |
397 |
Q |
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| T |
10691027 |
tctccccgcttcacaaatgcctgaatacttgtggctcgcccaagcaactgcagaaagtcatatgaaatggttcaaaaataaattct |
10690942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 195 - 361
Target Start/End: Complemental strand, 47430936 - 47430770
Alignment:
| Q |
195 |
aaaaacccaccatttaaaacccattccgacttgttgctggtgtttattttacgcataattgtaatttgctcctctttatagtcccccctcaaggtaatct |
294 |
Q |
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| T |
47430936 |
aaaatcccaccatttaaaacccattcggacttgttgatggtgtttattttacgcataattgtaatgtgatcctctttatggtctcccctcaaggtaatct |
47430837 |
T |
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| Q |
295 |
taatgtgcccagaatcttctccccgcttcacaaatgcctgaatacttgtggctcgcccaagcaactg |
361 |
Q |
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| T |
47430836 |
taatgtggccagaatcttctccccgcttcacatatgccggaatacttgtggctcgcccaagcaactg |
47430770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 367
Target Start/End: Original strand, 15854099 - 15854371
Alignment:
| Q |
97 |
cttttaaacatttctaatacagttaaaatcaaccaaaagacttaacaattgctatcaaagtgaaagtagcattcaataaaagagtatatct--ggtgtca |
194 |
Q |
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| T |
15854099 |
cttttaaacatttctactacagttaacatcaatcaaaagacttaacaactgctgtcaaaatgatagtagcatttaataaaattctgtatctagtgtgtta |
15854198 |
T |
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| Q |
195 |
aaaaacccaccatttaaaacccattccgacttgttgctggtgtttattttacgcataattgtaatttgctcctctttatagtcccccctcaaggtaatct |
294 |
Q |
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| T |
15854199 |
aaaatcttaccgtttaaaaaccattcggacttgcggctgatattgattttacgcataattgtaatgtgatcccctatatgctcccctcttaaggtaatct |
15854298 |
T |
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| Q |
295 |
taatgtgcccagaatcttctccccgcttcacaaatgcctgaatacttgtggctcgcccaagcaactgcagaaa |
367 |
Q |
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| T |
15854299 |
taatgtggccggactcttttccctccttcacaaattctgcaacacacgtggctcgcccaagcaactgcagaaa |
15854371 |
T |
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