View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_34 (Length: 395)

Name: NF14784_low_34
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_34
NF14784_low_34
[»] chr1 (3 HSPs)
chr1 (17-298)||(8300603-8300884)
chr1 (26-298)||(8297034-8297306)
chr1 (26-298)||(18279341-18279613)
[»] chr6 (1 HSPs)
chr6 (26-218)||(1145236-1145428)
[»] chr5 (1 HSPs)
chr5 (26-86)||(21120553-21120613)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 8300603 - 8300884
Alignment:
Q  17 agatctgcgtaaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatcctt 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8300603 agatctgcgtaaagatttcgagacacttcattttgtactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatcctc 8300702  T
Q  117 catagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300703 catagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccat 8300802  T
Q  217 ttttcgtcaagactatccagattttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca 298  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||||    
T  8300803 ttttcgtcaagactatccagattttctcccttcttctcgaattgtttctctttttccataaatttaattagctcagccaaca 8300884  T

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Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 8297034 - 8297306
Alignment:
Q  26 taaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatccttcatagactt 125  Q
    ||||| ||| |||| | |||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  8297034 taaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctccatagactt 8297133  T
Q  126 gatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtca 225  Q
    ||||||||| |||||||||||| | |||||||||| |||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||     
T  8297134 gatagactcgagaaaattcagcatcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcatcc 8297233  T
Q  226 agactatccagattttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca 298  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8297234 agattatccagattttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca 8297306  T

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Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 298
Target Start/End: Complemental strand, 18279613 - 18279341
Alignment:
Q  26 taaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatccttcatagactt 125  Q
    ||||| ||| |||||| ||||  |||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||| |||||||| || ||||||    
T  18279613 taaagcttttgagacaattcaaattatcctccatagtttgcttttcaactttgacactttctaagttcccttttaattccattctatcctccaaagactt 18279514  T
Q  126 gatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtca 225  Q
     |||||||| |||||||||||||||||| |||||||||||| || | ||  ||||  |||||| |||    |||| || ||||||||||||| | | |||    
T  18279513 aatagactcgagaaaattcagcgtaaagcttttgatatatccaatatacgtcaaaatattatcaaactttgccacattgattatcatccattgtacatca 18279414  T
Q  226 agactatccagattttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca 298  Q
    ||| |||||||||||||  |||||||||||||||| ||  |||||||||||||| ||||||||||||||||||    
T  18279413 agattatccagattttcaaccttcttctccaattgattatctttttccataaatttatttagctcagccaaca 18279341  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 1145236 - 1145428
Alignment:
Q  26 taaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatccttcatagactt 125  Q
    ||||| ||||||| ||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || | ||||    
T  1145236 taaagctttcgagccaaatcattttatcctccatagtttgcatttcaattctgatactttctaagttcccttttaattccattctatcctccagatactt 1145335  T
Q  126 gatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccattt 218  Q
    ||||||||| ||||||||||| |||||| |||| |||  ||||||||||  ||||  |||||| |||  | |||| || ||||||||||||||    
T  1145336 gatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaatattatcaaacttagccacattgattatcatccattt 1145428  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 21120613 - 21120553
Alignment:
Q  26 taaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttc 86  Q
    ||||||||| ||||||| | | | ||| |||||||||||||||||||||||||| ||||||    
T  21120613 taaagattttgagacacatgagtctatcctccatagtttgcatttcaactctgagactttc 21120553  T

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