View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_36 (Length: 392)
Name: NF14784_low_36
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 172 - 392
Target Start/End: Complemental strand, 17284505 - 17284288
Alignment:
| Q |
172 |
aaaactctacgaaaaacaagtttgttatgacggatttagaaaaaatgagatacttccttggtgtggaagttaagaaacttgaatacggaacattcattcc |
271 |
Q |
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| T |
17284505 |
aaaactcaatgaaaaacaagtttgttatgaaggatttagaaaaaataagatacttccttggtgtggaagttaagaaacttgaatacggaacattcattcc |
17284406 |
T |
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| Q |
272 |
ccagctgaaatttgctaataatgaaatattaactaggtttggcatggagaacattaacaaagtatgcaatcttatagtccctaggagcaagctatcaaga |
371 |
Q |
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| T |
17284405 |
ccagctgaaatttgc---taatgaaatattaactaggtttggcatggagaacattaacaaagtatgcaatcttatagtccctaggaacaagctattaaga |
17284309 |
T |
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| Q |
372 |
gatgaaggtggaaaagtagtt |
392 |
Q |
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| T |
17284308 |
gatgaaggtggaaaagtagtt |
17284288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 17284697 - 17284541
Alignment:
| Q |
17 |
atgtatatgtagatcaagctcttggctatcagaataaagagaagaagaaattgtataagctgatgaaagctcagtatggtctaaggaaagctcaaagggc |
116 |
Q |
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| T |
17284697 |
atgtatacgtagatcaacctcttagctatcagaataaagagaagaagaaattgtataagctgatgaaagctcagtatggtctaaggaaagctcaaagggc |
17284598 |
T |
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| Q |
117 |
atggtatagtaagatagattcnnnnnnngttaacggaaatttgacaaatgtcctcaa |
173 |
Q |
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| T |
17284597 |
atggtatagtaagatagattctttttttgttaacggaaatttgacaaatgtcctcaa |
17284541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 46431446 - 46431395
Alignment:
| Q |
192 |
tttgttatgacggatttagaaaaaatgagatacttccttggtgtggaagtta |
243 |
Q |
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| T |
46431446 |
tttgtcatgactgatttgggaaaaatgagatactttcttggtgtggaagtta |
46431395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 2083224 - 2083280
Alignment:
| Q |
189 |
aagtttgttatgacggatttagaaaaaatgagatacttccttggtgtggaagttaag |
245 |
Q |
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| T |
2083224 |
aagtttgttatgactgatctaggaaaaatgaggtactttcttggagtagaagttaag |
2083280 |
T |
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