View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_low_38 (Length: 383)
Name: NF14784_low_38
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 42527672 - 42527302
Alignment:
| Q |
1 |
attttaagaattattttgtaactccaagttagcattttattaatattttctatagttagtgaacaatcatgcgtactatatattgtaatgttccataaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42527672 |
attttaagaattattttgtaactccaagttagcattttattaatattttctatatttagggaacaatcatgcgtactatatattgtaatgttccataaca |
42527573 |
T |
|
| Q |
101 |
taatgacacatattgctacaatataggaagcttaatattgacgccacccataattagctaactaaaatatagtacttcttattacattacatgataatag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42527572 |
taatgacacatattgctataatataggaaggttaatattgacgccacccataattagctaactaaaatatagtacttcttattacattacatgataatag |
42527473 |
T |
|
| Q |
201 |
tatagaggatatataccttagactccaagtaacaacatagtgtagcttctattttcttcttatatgatgttgcctacctattgtatggtattgtacaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42527472 |
tatagaggatatataccttagactccaagtaacaacatagtgtagcttctattttcttcttatatgatgttgcctacctattgtatggtattgtacaggc |
42527373 |
T |
|
| Q |
301 |
tcagctagctataaatagttgtgtaactactttcattcttcataatacttctcttgctgtgtttcttctca |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42527372 |
tcagctagctataaatagttgtgtaactactttcattcttcataatacttctcttgctgtgtttcttctca |
42527302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 42519414 - 42519232
Alignment:
| Q |
1 |
attttaagaattattttgtaactccaagttag----cattttattaatattttctatagttagtgaacaatcatgcgtactatatattgtaatgttccat |
96 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||| |||||| |||||||| |||||||| ||||| |||||||| || |||||||| |||| |
|
|
| T |
42519414 |
attttaagaagtattttgtaactccaagttagttagcagtttgttaataatttctatatttagtgaataatcacgcgtactacattttgtaatgaaccat |
42519315 |
T |
|
| Q |
97 |
aacataatgacacatattgctacaatataggaagcttaatattgacgccacccataattagctaactaaaatatagtacttct |
179 |
Q |
| |
|
|||||||||||| | ||| | ||| || |||| ||||||||||| ||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
42519314 |
aacataatgacatgtgttgttgtaatctatgaaggttaatattgactccacccataattagctaacaaaaagataatacttct |
42519232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 331
Target Start/End: Complemental strand, 1079865 - 1079727
Alignment:
| Q |
186 |
attacatgataatagtatagaggatatataccttagactccaagtaacaacatagtgtagcttctattttcttcttatatgatgttgcctacctattgta |
285 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||||||||| |||| || ||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1079865 |
attacatgatactagtatagaagatag----cttagactccaagtaaca---tagtataacttatctttacttcttatatgatgttgcctacctattgta |
1079773 |
T |
|
| Q |
286 |
tggtattgtacaggctcagctagctataaatagttgtgtaactact |
331 |
Q |
| |
|
| || ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
1079772 |
agctaatgtacaggctcagctagctatgaataattgtgtaactact |
1079727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University