View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_low_42 (Length: 361)
Name: NF14784_low_42
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_42 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 20005713 - 20006063
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaacc------ |
111 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20005713 |
tgaatttgttgttggttttagatgtggccaaaccttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaaccagttaa |
20005812 |
T |
|
| Q |
112 |
--agttaaaggtcaggttttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgttt |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20005813 |
ccagttaaaggtcagattttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgttt |
20005912 |
T |
|
| Q |
210 |
gaaggaaaagtttgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcactta |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||| ||||||||||||| |
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| T |
20005913 |
gaaggaaaagtctgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtatatcaaactgaatttctaattattgaaagcactta |
20006012 |
T |
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| Q |
310 |
tatgctatatgcacttaaatagaaatagcttattttcctggggtcttcatt |
360 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
20006013 |
tatgctataagcacttaaatagaaatgccttattttcctggggtcttcatt |
20006063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 14124652 - 14124302
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaaccagttaa |
117 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14124652 |
tgaatttgttgttggttttagatgtggccaaaccttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaaccagttaa |
14124553 |
T |
|
| Q |
118 |
--------aggtcaggttttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgttt |
209 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14124552 |
ccagttaaaggtcagattttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgttt |
14124453 |
T |
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| Q |
210 |
gaaggaaaagtttgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcactta |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||| ||||||||||||| |
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| T |
14124452 |
gaaggaaaagtctgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtatatcaaactgaatttctaattattgaaagcactta |
14124353 |
T |
|
| Q |
310 |
tatgctatatgcacttaaatagaaatagcttattttcctggggtcttcatt |
360 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
14124352 |
tatgctataagcacttaaatagaaatgccttattttcctggggtcttcatt |
14124302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 12735891 - 12735558
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaaccagttaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12735891 |
tgaatttgttgttggttttagatgtggccaaaccttattcaaaaattggaggactttatgtcatcgaaactatgttt----------atgaaccaattaa |
12735802 |
T |
|
| Q |
118 |
aggtcaggttttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgtttgaaggaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12735801 |
aggtcaggttttgttttcttaatttgttctatcatattctaaccgttttctttcatattcctaagcctttcagcattgcattggtaatgtttgaaggaaa |
12735702 |
T |
|
| Q |
218 |
agtttgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcacttatatgctat |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12735701 |
agtctgcattgcttgcagctttaattagtagttataagaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagcacttatatgctat |
12735602 |
T |
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| Q |
318 |
atgcacttaaatagaaatagcttattttcctggggtcttcattt |
361 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12735601 |
aagcacttaaatagaaatagcttattttcctggggtcttcattt |
12735558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 12798718 - 12798385
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaattggaggactttatgtcatcgaaactatgtttctgaacttacatgaaccagttaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12798718 |
tgaatttgttgttggttttagatgtggccaaaccttattcaaaaattggaggactttatgtcatcgaaactatgttt----------atgaaccaattaa |
12798629 |
T |
|
| Q |
118 |
aggtcaggttttgttttcttaatttgttctatcatattctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgtttgaaggaaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12798628 |
aggtcaggttttgttttcttaatttgttctatcatattctaaccgttttctttcatattcctaagcctttcagcattgcattggtaatgtttgaaggaaa |
12798529 |
T |
|
| Q |
218 |
agtttgcattgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcacttatatgctat |
317 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12798528 |
agtctgcattgcttgcagctttaattagtagttataagaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagcacttatatgctat |
12798429 |
T |
|
| Q |
318 |
atgcacttaaatagaaatagcttattttcctggggtcttcattt |
361 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12798428 |
aagcacttaaatagaaatagcttattttcctggggtcttcattt |
12798385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 154 - 361
Target Start/End: Original strand, 53322550 - 53322756
Alignment:
| Q |
154 |
ttctgaccgttttctttcatattcctaagcctttcagcattgcattggtaatgtttgaaggaaaagtttgcattgcttgcagctttaattagtagttata |
253 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53322550 |
ttcttaccattttcttttatattcctaagcctttcagcattgcattggtaatgtgtgaaggagaagtttgcattgcttgcagctttaattagtagttata |
53322649 |
T |
|
| Q |
254 |
agaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcacttatatgctatatgcacttaaatagaaatagcttattttcctggggt |
353 |
Q |
| |
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|||||||||||||||||||| | |||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
53322650 |
agaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagcacttatatgctataagcacttaaatagaaatagcttatttttctggggt |
53322748 |
T |
|
| Q |
354 |
cttcattt |
361 |
Q |
| |
|
|||||||| |
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| T |
53322749 |
cttcattt |
53322756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 53322429 - 53322551
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaat-------tggaggactttatgtcatcgaaactatgtttct-gaacttacatgaa |
109 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||| || |
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| T |
53322429 |
tgaatttgttgttggttatagatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaactatgtttctggaacttacataaa |
53322528 |
T |
|
| Q |
110 |
ccagttaaaggtcaggttttgtt |
132 |
Q |
| |
|
|||||||||||| ||||| |||| |
|
|
| T |
53322529 |
ccagttaaaggttaggttctgtt |
53322551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 227 - 361
Target Start/End: Complemental strand, 35052892 - 35052758
Alignment:
| Q |
227 |
tgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagcacttatatgctatatgcactta |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35052892 |
tgcttgcagctttaattagtagttataagaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagcacttatatgctataagcactta |
35052793 |
T |
|
| Q |
327 |
aatagaaatagcttattttcctggggtcttcattt |
361 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||| |
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|
| T |
35052792 |
aatagaaatagcttatttttccgcggtcttcattt |
35052758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 35053020 - 35052974
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaatt |
64 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
35053020 |
tgaatttgtcgttggttatagatgtggccaaaccttattcaaaaatt |
35052974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 40059090 - 40059252
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaat-------tggaggactttatgtcatcgaaac-tatgttt-ctg-aacttacatg |
107 |
Q |
| |
|
|||||||||||||| || || ||||||||| | |||||||| |||| |||||||||| |||| || ||||| ||||||| ||| |||||||||| |
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| T |
40059090 |
tgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatg |
40059189 |
T |
|
| Q |
108 |
aaccagttaaaggtcaggttttgttttcttaatttgttctatcatattctgaccgttttcttt |
170 |
Q |
| |
|
|||| |||||||| |||||| | ||| ||| |||| |||| ||| ||||| ||| |||||||| |
|
|
| T |
40059190 |
aacctgttaaaggccaggttctctttgcttcatttcttctctcacattcttaccattttcttt |
40059252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 40077118 - 40077287
Alignment:
| Q |
18 |
tgaatttgttgttggttttatatgtggccaaatcttattcaaaaat-------tggaggactttatgtcatcgaaac-tatgttt-ctg-aacttacatg |
107 |
Q |
| |
|
|||||||||||||| || || ||||||||| | |||||||| |||| |||||||||| ||||||| ||||| ||||||| ||| |||||||||| |
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|
| T |
40077118 |
tgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatg |
40077217 |
T |
|
| Q |
108 |
aaccagttaaaggtcaggttttgttttcttaatttgttctatcatattctgaccgttttctttcatattc |
177 |
Q |
| |
|
|||| |||||||| |||||| | ||| ||| |||| |||| ||| ||| | ||| |||||||| ||||| |
|
|
| T |
40077218 |
aacctgttaaaggccaggttctctttgcttcatttcttctctcacatttttaccactttctttcttattc |
40077287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 40085219 - 40085269
Alignment:
| Q |
255 |
gaaaagaaaacaagtgtgtgtattaagctgattttctaattgttgaaagca |
305 |
Q |
| |
|
||||||||||||||||| | | ||||||||| || |||||||||||||||| |
|
|
| T |
40085219 |
gaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagca |
40085269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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