View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_43 (Length: 355)
Name: NF14784_low_43
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 36753505 - 36753168
Alignment:
| Q |
1 |
cattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753505 |
cattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaa |
36753406 |
T |
|
| Q |
101 |
aggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753405 |
aggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttca |
36753306 |
T |
|
| Q |
201 |
agaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaattttgtattactcatgccaattcgatagttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36753305 |
agaagattcagtgtttcctcctcagtccattcattttttgtctcctcacttatctccactctcttaaattttgtattactcataccaattcgatagttcc |
36753206 |
T |
|
| Q |
301 |
cacgaatgaaacacctcgcacacaacgtcctattattc |
338 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
36753205 |
cacgaatgaaacacctcgcacacaacttcctattattc |
36753168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 52 - 338
Target Start/End: Complemental strand, 19123788 - 19123502
Alignment:
| Q |
52 |
tttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
151 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123788 |
tttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
19123689 |
T |
|
| Q |
152 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcactt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
19123688 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattctttttttgtctcctcgctt |
19123589 |
T |
|
| Q |
252 |
atctccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattc |
338 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||||| |||| ||| ||||||||| ||||||||||| |||||||| |
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| T |
19123588 |
atctccactctcttgaattctgtattactcataccaattcgatagtttccacaaataaaacacctcacacacaacgtcatattattc |
19123502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 87 - 338
Target Start/End: Original strand, 54292881 - 54293132
Alignment:
| Q |
87 |
aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaat |
186 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
54292881 |
aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat |
54292980 |
T |
|
| Q |
187 |
ttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaattttgtattactcatgcc |
286 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||| || |
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| T |
54292981 |
tcgtaatagcttcaagaagattcagtgtttccttctcagtccattcatttttcgtctcctcgcttatctccactctcttgaattctgtattactcatacc |
54293080 |
T |
|
| Q |
287 |
aattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattc |
338 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||||||| |||||||| |
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| T |
54293081 |
aattcgataatttccacgaataaaacacctcgcacacaacgtcatattattc |
54293132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 54292742 - 54292831
Alignment:
| Q |
5 |
aagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatcaacgggaggcttcaactgatc |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
54292742 |
aagaggtgtgagacacattctcttactagatttatccgacggaacagtttcggattcacattcagcagcaacgggaggcttcaactgatc |
54292831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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