View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_46 (Length: 353)
Name: NF14784_low_46
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 3094232 - 3093908
Alignment:
| Q |
17 |
ataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctc |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094232 |
ataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctc |
3094133 |
T |
|
| Q |
117 |
aattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094132 |
aattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagc |
3094033 |
T |
|
| Q |
217 |
tccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094032 |
tccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttg |
3093933 |
T |
|
| Q |
317 |
ctatggcttctggggtcctttgctt |
341 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3093932 |
ctatggcttctggggtcctttgctt |
3093908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 3085386 - 3085078
Alignment:
| Q |
17 |
ataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctc |
116 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || |||||||||||||||||||| |
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| T |
3085386 |
ataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctc |
3085287 |
T |
|
| Q |
117 |
aattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagc |
216 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
3085286 |
aattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagc |
3085187 |
T |
|
| Q |
217 |
tccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttg |
316 |
Q |
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||||||||||| ||||||||||| || | | ||| || ||||||||||||||||| || ||||||||||| ||||| || |||||| |||||||||||| |
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| T |
3085186 |
tccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttg |
3085087 |
T |
|
| Q |
317 |
ctatggctt |
325 |
Q |
| |
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||||||||| |
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|
| T |
3085086 |
ctatggctt |
3085078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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