View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_47 (Length: 352)
Name: NF14784_low_47
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 26164411 - 26164728
Alignment:
| Q |
18 |
aatttactcatcattttctaacgcatgtacgtcaatataccacttttatcattgagccgacccttcgtaaactacatctatacattaaagtcttgttaac |
117 |
Q |
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| T |
26164411 |
aatttactcatcgttttctaatgcatgtacgtcaatatatcacttttatcattgagccgacccttcgtaaactacatctatacattaaagtcttgttaac |
26164510 |
T |
|
| Q |
118 |
ttacatcttaaaacaacatgttaaagattccaaaagtaacaagtttacattaatatannnnnnnnnactttactcaaattatatggacgactattaagac |
217 |
Q |
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| T |
26164511 |
ttacatcttaaaacaacatgttaaagattccaaaagtaacaattttacattaatatatatttttttactttactcaaattatatggacgactattaagac |
26164610 |
T |
|
| Q |
218 |
aaattttttattatgagtttcgaaacatgtacccttagaatatatgttagtatttgctattattaatttgttttaagaaaggaagttaattttcttacaa |
317 |
Q |
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| T |
26164611 |
aaattttttattatgagtttcgaaacatgtacccttagaacatatattagtatttgctattattaatttgtttt----aaggaagttaattttcttacaa |
26164706 |
T |
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| Q |
318 |
tgtgaat-cttgctcttcatct |
338 |
Q |
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||||||| |||| ||||||||| |
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| T |
26164707 |
tgtgaatccttgttcttcatct |
26164728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 21439041 - 21438973
Alignment:
| Q |
105 |
aagtcttgttaacttacatcttaaaacaacatgttaaagattccaaaagtaacaagtttacattaatat |
173 |
Q |
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| T |
21439041 |
aagtcttgttaatctgcatcttaaaaacacatgttaacgatttcaaaagaaacaattttacattgatat |
21438973 |
T |
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