View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_49 (Length: 348)
Name: NF14784_low_49
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_49 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 73 - 348
Target Start/End: Original strand, 10690580 - 10690855
Alignment:
| Q |
73 |
tcatatttcatgcttaatatttgaaatgaggaatactctctattctctaactccatannnnnnnngtttgaaaacggcgaaaatgttgtgactatggagt |
172 |
Q |
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| T |
10690580 |
tcatatttcatgcttaatatttgaaatgaggaatactctctattctctaaccccatattatttttgtttgaaaacggcgaaaaggttgtgactatggagt |
10690679 |
T |
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| Q |
173 |
tgatgagttgagttttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgagcttcataatttcatggcatttgattacttaaaat |
272 |
Q |
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| T |
10690680 |
tgatgagttgagttttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgaacttcataatttcatgacatttgattacttaaaat |
10690779 |
T |
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| Q |
273 |
gtaaacccagggctcggttgaatcgtgtaattgggcgagatggtactagaaaggattctcttgtgtgtgctattgc |
348 |
Q |
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| T |
10690780 |
gtaaacccgggcctcggttgaatctcgtaattgggccaaatggttctggaaagagttctcttgtatgtgctattgc |
10690855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 47430585 - 47430747
Alignment:
| Q |
186 |
tttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgagcttcataatttcatggcatttgattacttaaaatgtaaacccagggc |
285 |
Q |
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| T |
47430585 |
tttgtttcaggggggaggatgattatatgcctggaaacattttagaaatcgagcttcataatttcatgacatttgattacttaaaatgtaaacccgggcc |
47430684 |
T |
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| Q |
286 |
tcggttgaatcgtgtaattgggcgagatggtactagaaaggattctcttgtgtgtgctattgc |
348 |
Q |
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| T |
47430685 |
tcgcttgaatcttgtaattggtccaaatggttctggaaagagttctcttgtatgtgctattgc |
47430747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 15854662 - 15854482
Alignment:
| Q |
168 |
ggagttgatgagttgagttttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgagcttcataatttcatggcatttgattactt |
267 |
Q |
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| T |
15854662 |
ggagttgatgatttgaactttgtttcaggggggaggatgattatatgcctggaaacattatagagatagaacttcataatttcatgacatttgattacct |
15854563 |
T |
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| Q |
268 |
aaaatgtaaacccagggctcggttgaatcgtgtaattgggcgagatggtactagaaaggattctcttgtgtgtgctattgc |
348 |
Q |
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| T |
15854562 |
aaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgc |
15854482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 15854715 - 15854680
Alignment:
| Q |
20 |
ctatggtgattaactaaattaaaaattcatatttca |
55 |
Q |
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| T |
15854715 |
ctatggtgattaactaaattaaaaattaatatttca |
15854680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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