View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_5 (Length: 596)
Name: NF14784_low_5
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 304 - 590
Target Start/End: Complemental strand, 36205633 - 36205348
Alignment:
| Q |
304 |
aatattgatcttctgcagttaatttttgtagatttgaacgttaatctcctcctatgttcatgagaagaaagtcaactcaatggtattaaggctctgtaga |
403 |
Q |
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| T |
36205633 |
aatattgatcttctgcagttaatttttgtagatttgaacgttaatctcctcctatgttcatgagaagaaagtcaactcaatggtattaaggctctgtaga |
36205534 |
T |
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| Q |
404 |
cattatcctccacaccaattgttttcgtcgttgttgaggctgctacgtcggaacgaagaggataacattgttatccagtaattattacacaannnnnnnn |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205533 |
cattatcctccacaccaattgttttcgtcgttgttgaggctgctacgtcggaacgaagaggataacattgttatccagtaattattacacaa-ttttttt |
36205435 |
T |
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| Q |
504 |
nnaagnnnnnnntttaaatattgatagtaacggttgtagcaggtaagtctttgaagtttaagtcgatcttcagcttctgatgatgtc |
590 |
Q |
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| T |
36205434 |
ttaagaaaaaaatttaaatattgatagtaacggttgtagcaggtaagtctttgaagtttaagtcgatcttcagcttctgatgatgtc |
36205348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36205935 - 36205706
Alignment:
| Q |
1 |
agtgaaagatttaaattcgcatcacaatatatcaaatgttcatgcaaatttttaccatatgaattatacttcttagattttcatcaaacaagtttaaaca |
100 |
Q |
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| T |
36205935 |
agtgaaagatttaaattcgcatcacaatatatcaaatgttcatgcaaatttttaccatatgaattatacttcttagattttcatcaaacaagtttaaaca |
36205836 |
T |
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| Q |
101 |
attttacaaacggtatgaagtagatgctcaatattacaatatactagaggttgtaaaattgatagattgttaataattggtaaattcgtagtattcatga |
200 |
Q |
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| T |
36205835 |
attttacaaacggtatgaagtagatgctcaatattacaatatactagaggttgtaaaattgatagattgttaataattggtaaattcgtagtattcatga |
36205736 |
T |
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| Q |
201 |
agaaagatctgtcttgtaccacaaattgtc |
230 |
Q |
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| T |
36205735 |
agaaagatctgtcttgtaccccaaattgtc |
36205706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 493
Target Start/End: Complemental strand, 36182555 - 36182370
Alignment:
| Q |
304 |
aatattgatcttctgcagttaatttttgtagatttgaacgttaatctcctcctatgttcatgagaagaaagtcaactcaatggtattaaggctctgtaga |
403 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| | || ||| |
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| T |
36182555 |
aatattgatcttctgcagttaatttttgtagacttgaacgctaatctcctcgtatgttcatgagaagaaagtcaacccaatggtattaaggttatggaga |
36182456 |
T |
|
| Q |
404 |
--cattatcctccacaccaattgttttcgtcgttgttgaggctgctacgtcggaacgaagaggataacattgttatccagtaattattacac |
493 |
Q |
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| T |
36182455 |
cccattatcctccataccatttgttttcgtctttcttgaggctgctacgttggaac------gataaaattgttatccagtaactattacac |
36182370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 36182727 - 36182650
Alignment:
| Q |
80 |
ttcatcaaacaagtttaaacaattttacaaacggtatgaagtagatgctcaatattacaatatactagaggttgtaaa |
157 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36182727 |
ttcaccaaacaagtttaaacaattttacaaacggtatgaagtagatgctcaatattacaatatactagaggttgtaaa |
36182650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 36182857 - 36182793
Alignment:
| Q |
7 |
agatttaaattcgcatcacaatatatcaaatgttcatgcaaatttttaccatatgaattatactt |
71 |
Q |
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|||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
36182857 |
agatttaaatccgcgtcacaatatatcaaatattcatgcaactttttaccatatgaattatactt |
36182793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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