View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_50 (Length: 345)
Name: NF14784_low_50
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 55091808 - 55092121
Alignment:
| Q |
12 |
aagaatatcataccatttcaactgcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaaaaacaacaatc |
111 |
Q |
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| T |
55091808 |
aagaaaatcataccatttcaactgcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaacaacaacaatc |
55091907 |
T |
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| Q |
112 |
gcttaaatcgttagccaaatcactcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcag |
211 |
Q |
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| T |
55091908 |
gcttaaatcgttagccaaatcactcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcag |
55092007 |
T |
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| Q |
212 |
atcgcagatgcttctccggtgtcgagtaaggggaaacgtgataatgttccgggaaattcagttggagttgattctacttggagaactccaaaacgacaga |
311 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
55092008 |
atcgcagatgcttctccggtgacgagtaaggggaaacgtgataatgttccgggaaattcatttggagttgattctacttggagaactccgaaacgacaga |
55092107 |
T |
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| Q |
312 |
ggaagacgacgatg |
325 |
Q |
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| T |
55092108 |
ggaagacgacgatg |
55092121 |
T |
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