View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_52 (Length: 343)
Name: NF14784_low_52
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 18406888 - 18407192
Alignment:
| Q |
16 |
acatactgactaaaatcgaacgtttcaggtataatcggaggagtagaacttcgaatcaaagcccaattcacaccttcgaaaaatggatgttgtttaatct |
115 |
Q |
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| T |
18406888 |
acatactgactaaaatcgaacgtttcaggtataatcggaggagtagaacttcgaatcaaagcccaattaacaccttcgaaaaatggatgttgtttaatct |
18406987 |
T |
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| Q |
116 |
cagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctctaataagatccctcgctaccggactagcggaaggatggtcagg |
215 |
Q |
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| T |
18406988 |
cagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctctaataagatccctcgctaccggactagcggaaggatggtcagg |
18407087 |
T |
|
| Q |
216 |
aaaccttaaaggctgccctacaacattaaaaagcgttgctcggtttccattacctttaaacggtgttgttccgtataaaagctcgtataaaaatatgcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18407088 |
aaaccttaaaggctgccctacaacattaaaaagcgttgctcggtttccattacctttaaacggtgttgttccgtataaaagctcgtataaaaatatgcca |
18407187 |
T |
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| Q |
316 |
aaagt |
320 |
Q |
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||||| |
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| T |
18407188 |
aaagt |
18407192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 26569226 - 26569333
Alignment:
| Q |
75 |
agcccaattcacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagcaattctcttatgaggctctttaaccaacaaccctcta |
174 |
Q |
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| T |
26569226 |
agcccaattcactccttcaaaaaatggatgctgttttatttctgttgctcctcttttatatgcaattctcttctgaggttccttaatcaacaatcctcta |
26569325 |
T |
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| Q |
175 |
ataagatc |
182 |
Q |
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|||||||| |
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| T |
26569326 |
ataagatc |
26569333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 9940398 - 9940465
Alignment:
| Q |
70 |
atcaaagcccaattcacaccttcgaaaaatggatgttgtttaatctcagtagcacctcttttataagc |
137 |
Q |
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||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||||||||| |
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| T |
9940398 |
atcaaggcccaattcacgccttcaaaaaagggatgttgtttaatctcggttgcgcctcttttataagc |
9940465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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