View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_53 (Length: 336)
Name: NF14784_low_53
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 6523862 - 6524177
Alignment:
| Q |
5 |
aactgatttgaatgatttcaatcaagttgttcgagacttgcttgataacttgactagtagagctgcatctggtgattctcgtttaaaatatgcagcggct |
104 |
Q |
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| T |
6523862 |
aactgatttgaatgatttcaatcaagttgttcgagacttgcttgataacttgactagtagagctgcatctggtgattctcgtttaaaatatgcagtggct |
6523961 |
T |
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| Q |
105 |
agggctcgtggtcctaatgatcaatccatatatggtcttgttcagtgtacgcctgatttatctgagtcagattgtaattcatgtttggttcaatccattg |
204 |
Q |
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| T |
6523962 |
agggctcgtggtcctaatgatcaatccatatatggtcttgttcagtgtacgcctgatttatctgagtcagattgtaattcatgtttggttcaatccattg |
6524061 |
T |
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| Q |
205 |
accgtataccgattgattgttgtaaagataagaaaggtggaagagttgttaggcctagttgtaacatgagatttgaaaccgaatttctcttctatgatcc |
304 |
Q |
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| T |
6524062 |
accgtataccgattgattgttgtaaagataagaaaggtggaagagttgttaggcctagttgtaacatgagatttgaaaccgattttctcttctatgatcc |
6524161 |
T |
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| Q |
305 |
tacagcaccaccacct |
320 |
Q |
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| T |
6524162 |
tacagcaccaccacct |
6524177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 6499833 - 6499771
Alignment:
| Q |
221 |
ttgttgtaaagataagaaaggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
283 |
Q |
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| T |
6499833 |
ttgttgtaataataagattggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
6499771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 6499919 - 6499857
Alignment:
| Q |
132 |
atatatggtcttgttcagtgtacgcctgatttatctgagtcagattgtaattcatgtttggtt |
194 |
Q |
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| T |
6499919 |
atatatggtttggttcaatgtacacctgatttgtctgaaactgattgtaattcatgtttggtt |
6499857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 47778308 - 47778344
Alignment:
| Q |
132 |
atatatggtcttgttcagtgtacgcctgatttatctg |
168 |
Q |
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| T |
47778308 |
atatatggtcttgctcagtgtacacctgatttatctg |
47778344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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