View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_54 (Length: 332)
Name: NF14784_low_54
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 6266145 - 6265845
Alignment:
| Q |
14 |
cttaaatcttcatatttttcatcaatcaagatcttccaaaatgaaggagaaattcacaactaaaagaaattgatatcttgtccatctacaacacattcca |
113 |
Q |
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| T |
6266145 |
cttagatcttcatatttttcatcaatcaagatcttccaaaatgagggagaaattcacaactaaaagaaattgatatcttgtctatctacaacacattcca |
6266046 |
T |
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| Q |
114 |
ctgcaaaaatttggacgatttaatcttctccatccaaaagttcagaaattagagcatcaaacaataaaacaagaatacttgagatgaaaactcatgattc |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
6266045 |
ctgcaaaaatttggacgatttgatcttctccatccaaaagttcagaaattagagcatcaaacaataaaacgagaatacttgagatgaaaa-tcatgattc |
6265947 |
T |
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| Q |
214 |
gcaaaacaattaaaagttggtgtttgaaacaatttttgatatttgaaatgtacaaaaagaaaaattgagtaagaatatgaaggggtgtacttgatatata |
313 |
Q |
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| T |
6265946 |
gcagaacaattaaaagttggcgtttggaacaatttttgatatttgaaatgtacaaaaagaaaaattgagtaagaatatgaaggggtgtacttgatatata |
6265847 |
T |
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| Q |
314 |
gg |
315 |
Q |
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|| |
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| T |
6265846 |
gg |
6265845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 6256321 - 6256222
Alignment:
| Q |
27 |
atttttcatcaatcaagatcttccaaaatgaaggagaaattcacaactaaaagaaattgatatcttgtccatctacaacacattccactgcaaaaatttg |
126 |
Q |
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| T |
6256321 |
atttttcatcaatcaagatcttccaaaatgagagagaaatttatatctaaaa-aaattgggatcttctccatctacaacaccttctactgccaaaatttg |
6256223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 6235494 - 6235414
Alignment:
| Q |
113 |
actgcaaaaatttggacgatttaatcttctccatccaaaagttcagaaattagagcatcaaacaataaaacaagaatacttga |
195 |
Q |
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| T |
6235494 |
actgccaaaatttgggctatttgatcttctccatcaaaaagttcagaaattagagcatcaaaca--aaaacaagaatatttga |
6235414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 6235268 - 6235175
Alignment:
| Q |
205 |
tcatgattcgcaaaacaattaaaagttggtgtttgaaacaatttttgatatttgaaatgtacaaaaagaaaaattg-agtaagaatatgaaggg |
297 |
Q |
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||||||||| || ||||||||||| |||| ||||||||||| |||| |||||| || |||||||| ||||| || ||||||||||||||||| |
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| T |
6235268 |
tcatgattcacataacaattaaaatttggcgtttgaaacaaattttagcatttgatatatacaaaaaaaaaaagtgtagtaagaatatgaaggg |
6235175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 6235586 - 6235546
Alignment:
| Q |
27 |
atttttcatcaatcaagatcttccaaaatgaaggagaaatt |
67 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||| |
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| T |
6235586 |
atttttcatcaatcaagatcttccgaaatgagggagaaatt |
6235546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 6275726 - 6275662
Alignment:
| Q |
136 |
atcttctccatccaaaagttcagaaattagagcatcaaacaataaaaca-agaatacttgagatg |
199 |
Q |
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|||||||||||| ||||||| | ||||| |||||||||| |||||||| |||||| |||||||| |
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| T |
6275726 |
atcttctccatcaaaaagttgataaattttagcatcaaactataaaacatagaatatttgagatg |
6275662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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