View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_55 (Length: 327)
Name: NF14784_low_55
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 27507914 - 27508222
Alignment:
| Q |
1 |
atgccttgaatatatatctagagcagattgtaaactataatgacaggagcaaataaggtagaaagggtgaaaagcatgttttgacttgtgactgaatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||| |
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| T |
27507914 |
atgccttgaatatatatctagagcagattgtaaactataatgacaggagcaaataaagcagaaagggtgaaaaacatgttttgacttatgactgaatcac |
27508013 |
T |
|
| Q |
101 |
ctcattatagcagtattcataaaaaatattgaaatataaatttaaagaaggaaaacgtgaaatctgtctgtaattggatcacatattttgtgacgaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27508014 |
ctcattatagcagtattcataaaaaatattgaaatataaatttaaagaaggaaaacgtgaaatctgactgtaattggatcacatattttgtgacgaataa |
27508113 |
T |
|
| Q |
201 |
attagagattccaacaaaaattatcgtnnnnnnnnntcatggcaattttttcttttccttccacatgacacaatttgatgaaacttatctttctagctca |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508114 |
attagagattccaacaaaaattatcgtaaaaaaaaatcatggcaattttttcttttccttccacatgacacaatttgatgaaacttatctttctagctca |
27508213 |
T |
|
| Q |
301 |
caaatctgg |
309 |
Q |
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||||||||| |
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| T |
27508214 |
caaatctgg |
27508222 |
T |
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