View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_low_58 (Length: 309)
Name: NF14784_low_58
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_58 |
 | |
|
| [»] scaffold0886 (1 HSPs) |
| | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold1372 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 44291359 - 44291222
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taa |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
44291359 |
cagtgcccccggggcattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttccaa |
44291260 |
T |
|
| Q |
104 |
aacagaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| |||||| |
|
|
| T |
44291259 |
gacag-aaattctatttatagattccttaaccagtgccc |
44291222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 27143997 - 27144120
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| ||||||||||||||||||||||||||| |||||||||| || ||| ||||||||||||| |
|
|
| T |
27143997 |
cattggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattcta |
27144096 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgcc |
141 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
27144097 |
tttatagatttcttaaccagtgcc |
27144120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 42163734 - 42163598
Alignment:
| Q |
7 |
gtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaa |
105 |
Q |
| |
|
||||| ||||| ||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || | |
|
|
| T |
42163734 |
gtgcctccggggcattggttacacaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacggtttatatttccaaga |
42163635 |
T |
|
| Q |
106 |
cagaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||||||||||||| ||||||| | ||||| |||||| |
|
|
| T |
42163634 |
cagaaaattctattaatagattccttaaccagtgccc |
42163598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 23208269 - 23208140
Alignment:
| Q |
7 |
gtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaa-a |
105 |
Q |
| |
|
|||||||||||||||||||||| || |||| || | ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| || | |
|
|
| T |
23208269 |
gtgcccccgggacattggttaaataccaaataaaatacgtttttattaaaaagtaatgtaatta---cttaataaaaagtgacagtttatattttcaaga |
23208173 |
T |
|
| Q |
106 |
cagaaaattctatttatagatttcctaaccggt |
138 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
23208172 |
cagaaaattctatttatagatttcttaaccggt |
23208140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 43862927 - 43863017
Alignment:
| Q |
7 |
gtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||| ||| |||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43862927 |
gtgcccctggggcattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgacagtttata |
43863017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 15671232 - 15671109
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| || || ||| |||||| || |
|
|
| T |
15671232 |
cattggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagaca-aaaatttta |
15671134 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||||||||| | ||||| |||||| |
|
|
| T |
15671133 |
tttatagattccttaaccagtgccc |
15671109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 32720635 - 32720527
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctat |
118 |
Q |
| |
|
||||||||||||| |||| |||| |||| |||||||||| |||| |||||||||||||||||| |||||||||||||| ||| || | |||||||||||| |
|
|
| T |
32720635 |
attggttaagcactaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtgacagtttatattttcaagaaagaaaattctat |
32720536 |
T |
|
| Q |
119 |
ttatagatt |
127 |
Q |
| |
|
| ||||||| |
|
|
| T |
32720535 |
taatagatt |
32720527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 44041409 - 44041331
Alignment:
| Q |
50 |
tattaaaaagtaatgtaattattacttaataaaaagtgacagtttatact-ttaaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
44041409 |
tattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctatttatagatt |
44041331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 35322016 - 35322114
Alignment:
| Q |
28 |
agcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| || | ||||||||||||||||||| |
|
|
| T |
35322016 |
agcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttata-tttctaagacaaaattctatttatagatt |
35322113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 36258679 - 36258782
Alignment:
| Q |
23 |
ggttaagcacaaaatgaagttagttattattaaaa-agtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctattt |
120 |
Q |
| |
|
|||||| ||| |||| |||| |||| ||||||||| ||||||||||| ||||||||||||||| ||||| |||||| || ||| |||||||||||||||| |
|
|
| T |
36258679 |
ggttaaacaccaaataaagtaagtttttattaaaaaagtaatgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaattctattt |
36258778 |
T |
|
| Q |
121 |
atag |
124 |
Q |
| |
|
|||| |
|
|
| T |
36258779 |
atag |
36258782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 17109620 - 17109526
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||||||||| || || | ||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
17109620 |
ttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaagatagaaaattctatttataaatttcttaacccgtgccc |
17109526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 49419137 - 49419063
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttat |
122 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |||||| || ||| |||||||||||||||||| |
|
|
| T |
49419137 |
ttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctatttat |
49419063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 52992440 - 52992546
Alignment:
| Q |
17 |
gacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattc |
115 |
Q |
| |
|
|||||||||||||||| |||| |||| | || ||| ||||| ||||||||||||||| ||||||||| ||| |||||||| ||| ||||||||||||| |
|
|
| T |
52992440 |
gacattggttaagcaccaaataaagtaattttttaccaaaaaataatgtaattattac-taataaaaaatgatagtttatattttcaaaacagaaaattt |
52992538 |
T |
|
| Q |
116 |
tatttata |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
52992539 |
tatttata |
52992546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 47877393 - 47877283
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattcta |
117 |
Q |
| |
|
||||||||| |||| ||||||| | || |||||||||| || ||||||||||| |||||||||| ||| |||||||| ||||||| | |||||| || |
|
|
| T |
47877393 |
cattggttatgcaccaaatgaaacaaatttttattaaaaaatagtgtaattattatttaataaaaaatgatagtttatatttttaaaatataaaatttta |
47877294 |
T |
|
| Q |
118 |
tttatagattt |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
47877293 |
tttatagattt |
47877283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 43652598 - 43652506
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||| |||| || ||||||||||||||||||||| | ||||||| |||||| ||||| |
|
|
| T |
43652598 |
cagtgccttcgggacatccgttaagcaccaaatgaagtaagtttctactaaaaagtaatgtaattattatctgataaaaaatgacagattata |
43652506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43014624 - 43014750
Alignment:
| Q |
1 |
taatcagtgcccc-cgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaat---tattacttaataaaaagtgacagtttat |
96 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||| |||| |||| |||| || ||||||||||||||||| ||||||| ||| |||||||||| ||||| |
|
|
| T |
43014624 |
taatcagtgcccttcggggcattgattaagcaccaaataaagtaagtttttgttaaaaagtaatgtaattactattactaaat-aaaagtgacaatttat |
43014722 |
T |
|
| Q |
97 |
actt-taaaacagaaaattctatttata |
123 |
Q |
| |
|
| || || |||||||||| |||||||| |
|
|
| T |
43014723 |
atttccaagacagaaaattatatttata |
43014750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 49710943 - 49711050
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
||||| |||||||| |||| || | |||| |||||||||| |||| ||||||||| ||| |||||| | ||| |||||| || ||| ||||||| ||||| |
|
|
| T |
49710943 |
cattgattaagcaccaaataaaataagtttttattaaaaattaatataattattattta-taaaaaataacattttatatttctaagacagaaa-ttcta |
49711040 |
T |
|
| Q |
118 |
tttatagatt |
127 |
Q |
| |
|
|||||||||| |
|
|
| T |
49711041 |
tttatagatt |
49711050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 40391333 - 40391208
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||| | |
|
|
| T |
40391333 |
cattggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagtttatattttcaagacagaaaattcga |
40391234 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgccct |
143 |
Q |
| |
|
|||||||||||| ||| | ||||||| |
|
|
| T |
40391233 |
tttatagatttcttaatcagtgccct |
40391208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 50127477 - 50127385
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||||||||| ||||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
50127477 |
cagtgcccccggggcattggttaagtaccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaatgacagtttata |
50127385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 44109200 - 44109083
Alignment:
| Q |
5 |
cagtgcccc-cgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-ta |
102 |
Q |
| |
|
||||||||| |||| ||||| |||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
|
|
| T |
44109200 |
cagtgcccctcggggcattgattaaccacaaa-tgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagggacagtttatatttcca |
44109102 |
T |
|
| Q |
103 |
aaacagaaaattctattta |
121 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
44109101 |
agatagaaaattctattta |
44109083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 15419766 - 15419657
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||| ||| |||| |||| | || ||||||||||||||| |||||||||||||||||||||| |||||||||| || || ||| ||||||||| |
|
|
| T |
15419766 |
cattggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagtaacagtttatatttccaatacaaaaaattcta |
15419667 |
T |
|
| Q |
118 |
tttatagatt |
127 |
Q |
| |
|
|||||||||| |
|
|
| T |
15419666 |
tttatagatt |
15419657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 26855953 - 26855833
Alignment:
| Q |
7 |
gtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaa |
105 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| |||| | || ||||||||| |||||||||||||||||| |||||||||||||| ||||| || || | |
|
|
| T |
26855953 |
gtgcctccggggcattggttaagcaccaaataaagtaaatttttattaaaa-gtaatgtaattattacttgataaaaagtgacagattatatttccaaga |
26855855 |
T |
|
| Q |
106 |
cagaaaattctatttatagatt |
127 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
26855854 |
caaaaaattctatttatagatt |
26855833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 33827939 - 33827818
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
|||||||||| || |||| || | | || |||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||| ||| |
|
|
| T |
33827939 |
attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat |
33827840 |
T |
|
| Q |
119 |
ttatagatttcctaaccggtgc |
140 |
Q |
| |
|
||||||||| | ||||| |||| |
|
|
| T |
33827839 |
ttatagattccttaaccagtgc |
33827818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 33840026 - 33840147
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
|||||||||| || |||| || | | || |||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||| ||| |
|
|
| T |
33840026 |
attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat |
33840125 |
T |
|
| Q |
119 |
ttatagatttcctaaccggtgc |
140 |
Q |
| |
|
||||||||| | ||||| |||| |
|
|
| T |
33840126 |
ttatagattccttaaccagtgc |
33840147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 50468892 - 50468813
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||| || ||| | |||||||| |||||||||||| |
|
|
| T |
50468892 |
ttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaagatagaaaattttatttatagatt |
50468813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19066857 - 19066973
Alignment:
| Q |
18 |
acattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattct |
116 |
Q |
| |
|
||||||||||||| | |||| |||| | || ||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| ||| | |||||| |
|
|
| T |
19066857 |
acattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattct |
19066955 |
T |
|
| Q |
117 |
atttatagatttcctaac |
134 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
19066956 |
atttatagatttcttaac |
19066973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19114747 - 19114863
Alignment:
| Q |
18 |
acattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattct |
116 |
Q |
| |
|
||||||||||||| | |||| |||| | || ||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| ||| | |||||| |
|
|
| T |
19114747 |
acattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattct |
19114845 |
T |
|
| Q |
117 |
atttatagatttcctaac |
134 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
19114846 |
atttatagatttcttaac |
19114863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 31884575 - 31884460
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||| |||| |||| ||||||||||||||||||||||||| || ||||||| || ||||||||| || || | || |||||||| |
|
|
| T |
31884575 |
cattggttaagcaccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaaatgtcagtttatatttccaagatag-aaattcta |
31884477 |
T |
|
| Q |
118 |
tttatagatttcctaac |
134 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
31884476 |
tttatagatttcttaac |
31884460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 48282981 - 48282883
Alignment:
| Q |
44 |
agttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| | |||||||||||||| ||||| ||| || |||| |||||||||||||||||| | ||||| |||||| |
|
|
| T |
48282981 |
agtttttactaaaaagtaatgtaattattacctgataaaaagtgacagattatattttcaagacag-aaattctatttatagattccttaaccagtgccc |
48282883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 27742551 - 27742617
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaag |
85 |
Q |
| |
|
||||||||||||| ||| ||||| | || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27742551 |
cattggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag |
27742617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 20471413 - 20471326
Alignment:
| Q |
53 |
taaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttatagatttcctaaccggtgc |
140 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| || ||| ||| | |||| |||||||||||||| ||||| |||| |
|
|
| T |
20471413 |
taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc |
20471326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 20560124 - 20560211
Alignment:
| Q |
53 |
taaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttatagatttcctaaccggtgc |
140 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| || ||| ||| | |||| |||||||||||||| ||||| |||| |
|
|
| T |
20560124 |
taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc |
20560211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 16963690 - 16963639
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaatta |
70 |
Q |
| |
|
|||||||||||||| ||||||||| | || |||||||||||||||||||||| |
|
|
| T |
16963690 |
cattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaatta |
16963639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 30627731 - 30627652
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttatta-ttaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||||| || ||||| | || ||| ||||||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
30627731 |
cattggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggttata |
30627652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 13534612 - 13534486
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||| | |||| |||| | || ||||||||||||||||||||||||| || |||||| |||| |||||| ||||| | || ||||||| |
|
|
| T |
13534612 |
cattggttaagcgccaaataaagtaaatttttattaaaaagtaatgtaattattatttggtaaaaaaagacaatttatatttttaagagag-caattcta |
13534514 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgccctga |
145 |
Q |
| |
|
|| ||||||||| ||||| |||| |||| |
|
|
| T |
13534513 |
ttaatagatttcttaaccagtgctctga |
13534486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 11802936 - 11802984
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | |||||| |||||||||| |
|
|
| T |
11802936 |
ttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttata |
11802984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 2611274 - 2611139
Alignment:
| Q |
9 |
gcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaaca |
107 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||| |
|
|
| T |
2611274 |
gcccctggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagaca |
2611175 |
T |
|
| Q |
108 |
gaaaattctatttatagatttcctaaccggtgccct |
143 |
Q |
| |
|
||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
2611174 |
taaatttctatttatagattccttaaccagtgccct |
2611139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14863316 - 14863412
Alignment:
| Q |
1 |
taatcagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14863316 |
taatcagtgcccccggaacattggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtgacagtttata |
14863412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 7609669 - 7609547
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taa |
103 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||||||| ||| |||||||| || || |
|
|
| T |
7609669 |
cagtgctcccggggcattggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgatagtttatatttccaa |
7609570 |
T |
|
| Q |
104 |
aacagaaaattctatttatagatt |
127 |
Q |
| |
|
||||| |||||||| ||||||||| |
|
|
| T |
7609569 |
aacag-aaattctaattatagatt |
7609547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 35185255 - 35185362
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctat |
118 |
Q |
| |
|
||||||||||||| |||| || | |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| || ||| |||||||||| |
|
|
| T |
35185255 |
attggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaat-aaaagtgacagtttatattttcaagacataaaattctat |
35185353 |
T |
|
| Q |
119 |
ttatagatt |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
35185354 |
ttatagatt |
35185362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 11320122 - 11320201
Alignment:
| Q |
17 |
gacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11320122 |
gacattggttaagcaccaaaa-aagttaatttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttata |
11320201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21052761 - 21052665
Alignment:
| Q |
1 |
taatcagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||| ||||| |||| |||||||||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21052761 |
taatcagtgtacctggaacattggttaagcaccaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttata |
21052665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 31619317 - 31619421
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||||||||| | || ||||||||||||||||||||||||| || || | ||||||| ||||||| || ||| ||||||||||||| |
|
|
| T |
31619317 |
cattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattatttcat-agaagtgac-gtttatatttctaagacagaaaattcta |
31619414 |
T |
|
| Q |
118 |
tttatag |
124 |
Q |
| |
|
||||||| |
|
|
| T |
31619415 |
tttatag |
31619421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 22180369 - 22180262
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctat |
118 |
Q |
| |
|
||||||||||||| |||| || | | || |||||||||| |||| ||||||||| |||||||||| |||||||||||| ||| |||| |||||||| ||| |
|
|
| T |
22180369 |
attggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaa-tgacagtttatattttcaaaatagaaaattttat |
22180271 |
T |
|
| Q |
119 |
ttatagatt |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
22180270 |
ttatagatt |
22180262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 16802059 - 16802092
Alignment:
| Q |
53 |
taaaaagtaatgtaattattacttaataaaaagt |
86 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
16802059 |
taaaaagtaatgtaattattacttaatcaaaagt |
16802092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 19889725 - 19889867
Alignment:
| Q |
1 |
taatcagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||| ||||| || |
|
|
| T |
19889725 |
taatcagtgccttcggggcattggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacatattatattt |
19889824 |
T |
|
| Q |
101 |
-taaaacagaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
19889825 |
ccaaaacataaaattctatttatagatttcttaaccagtgccc |
19889867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 21646606 - 21646484
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taa |
103 |
Q |
| |
|
|||||||| ||| |||||||||| ||| ||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||| |||||| || || |
|
|
| T |
21646606 |
cagtgccctaggggcattggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacactttatatttccaa |
21646508 |
T |
|
| Q |
104 |
aacagaaaattctatttatagatt |
127 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
21646507 |
gacagaaaattctatgtatagatt |
21646484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 11610539 - 11610471
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattatta |
73 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||||||| |||||||| |
|
|
| T |
11610539 |
cagtgcccccggggcattggttaagcaccaaatgaagtaagttttcattaaaaagtaatgcaattatta |
11610471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 18243854 - 18243787
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagt |
86 |
Q |
| |
|
|||||||||||||| |||| |||| |||| ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
18243854 |
cattggttaagcaccaaataaagtaagtttttattaaaaagtaatataattattatttaataaaaagt |
18243787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 23788491 - 23788412
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacagaaaattctatttatagattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | |||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
23788491 |
ttattaaaaagtaatgtaattattacttaataaaaaatgataatttatattttcaaaatataaattctatttatagattt |
23788412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 37913118 - 37913041
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||| ||| ||||| |||| |||||||||| |||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
37913118 |
attggttaagcatcaaaagaagtaagtttttattaaaaattaatgtgattattacttgataaaaagtgacggtttata |
37913041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 32345477 - 32345580
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattctat |
118 |
Q |
| |
|
||||||||| || |||| |||| |||| |||| ||||| |||| ||||||||| |||||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
32345477 |
attggttaaacaataaataaagtaagtttttatcaaaaa-taatataattattatttaataaaaaatgacagtttatatttttaagacagaaaattctat |
32345575 |
T |
|
| Q |
119 |
ttata |
123 |
Q |
| |
|
||||| |
|
|
| T |
32345576 |
ttata |
32345580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 4141633 - 4141715
Alignment:
| Q |
14 |
cgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||| ||||| ||||||| |||| |||| | || ||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
4141633 |
cggggcattgattaagcatcaaataaagtaaatttttattaaaa-gtaatgtaattattactgaataaaaagtgacggtttata |
4141715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 44818465 - 44818430
Alignment:
| Q |
62 |
atgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44818465 |
atgtaattattacttaataaaaagtgacaatttata |
44818430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 23760674 - 23760642
Alignment:
| Q |
52 |
ttaaaaagtaatgtaattattacttaataaaaa |
84 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
23760674 |
ttaaaaagtaatgtaattattacttgataaaaa |
23760642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 28462672 - 28462550
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taa |
103 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
28462672 |
cagtgctcccgggacattggttaaacaccaaatgaagtaagtttttattaaaa-gtaatgtaattattacttaataaaaagtgatagtttatatttccaa |
28462574 |
T |
|
| Q |
104 |
aacagaaaattctatttatagatt |
127 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
28462573 |
gacaaaaaattctatttatagatt |
28462550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 900349 - 900243
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||| ||| |||| |||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| | ||| || |||||||||| || |
|
|
| T |
900349 |
cattggttaaacaccaaataaagtaagtttttattaaaaagtaatataattattacttaataaaaaatgacagtttaaattttcaagacagaaaattata |
900250 |
T |
|
| Q |
118 |
tttatag |
124 |
Q |
| |
|
||||||| |
|
|
| T |
900249 |
tttatag |
900243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 37919397 - 37919499
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||| |||| | || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||| || |
|
|
| T |
37919397 |
cattggttaagcaccgaataaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacagtttatattttcaaaacaaaaaatttta |
37919496 |
T |
|
| Q |
118 |
ttt |
120 |
Q |
| |
|
||| |
|
|
| T |
37919497 |
ttt |
37919499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 39065649 - 39065543
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||| ||||| | || |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
39065649 |
cattggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaagacag-aaattcta |
39065551 |
T |
|
| Q |
118 |
tttataga |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
39065550 |
tttataga |
39065543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 20821903 - 20821998
Alignment:
| Q |
34 |
aaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattctatttatagatttc |
129 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| | |||||||| |||||||||| |
|
|
| T |
20821903 |
aaataaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagaca-acaattctatctatagatttc |
20821998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 41675786 - 41675663
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| ||| ||||| | || ||||||||||| ||| |||||||||||| ||||||| ||| |||||||| ||| ||||||| |||||||| |
|
|
| T |
41675786 |
cattggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaacag-aaattcta |
41675688 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
||| |||||| | ||| |||||||| |
|
|
| T |
41675687 |
tttgtagattccttaatcggtgccc |
41675663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 39209479 - 39209374
Alignment:
| Q |
17 |
gacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattc |
115 |
Q |
| |
|
|||||||||||||||| ||| ||||| | || |||||||||||| |||| ||||||| ||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
39209479 |
gacattggttaagcaccaaacgaagtaaatttttattaaaaagtgatgt-attattatttaat-aaaagtgacagtttatatttccaaaacagaaaattc |
39209382 |
T |
|
| Q |
116 |
tatttata |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
39209381 |
tatttata |
39209374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 39534267 - 39534145
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aa |
103 |
Q |
| |
|
|||||||||| || | || ||||||||| |||||| || | || |||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |
|
|
| T |
39534267 |
cagtgcccccagggcgttagttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttatattttcaa |
39534168 |
T |
|
| Q |
104 |
aacagaaaattctatttatagatt |
127 |
Q |
| |
|
|||| |||||||| ||||||||| |
|
|
| T |
39534167 |
gacag-aaattctaattatagatt |
39534145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 29795500 - 29795581
Alignment:
| Q |
16 |
ggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||| ||||||||| ||| ||| | |||| || |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
29795500 |
ggacattcgttaagcaccaaaagaattaagtttttgttaaaaagtaatgtaattattaattgataaaaagtgacagtttata |
29795581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 30924834 - 30924900
Alignment:
| Q |
23 |
ggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgac |
89 |
Q |
| |
|
|||||||||| ||| ||||| |||| || ||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
30924834 |
ggttaagcaccaaaagaagtaagtttttgttagaaagtaatgtaattattacttgatgaaaagtgac |
30924900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 14110698 - 14110651
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
14110698 |
ttattaaaaagttatgtaattattactt-ataaaaagtgacggtttata |
14110651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 1988808 - 1988856
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | |||||| |||||||||| |
|
|
| T |
1988808 |
ttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttata |
1988856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 45907163 - 45907026
Alignment:
| Q |
5 |
cagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaa |
104 |
Q |
| |
|
||||| |||||||| |||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
45907163 |
cagtgtccccgggatattggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttata-tttaca |
45907065 |
T |
|
| Q |
105 |
aca-gaaaattctatttatagatttcctaaccggtgccc |
142 |
Q |
| |
|
| | |||| |||||||||||||| | ||||| |||||| |
|
|
| T |
45907064 |
agacaaaaaatctatttatagattccttaacccgtgccc |
45907026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 22035719 - 22035868
Alignment:
| Q |
8 |
tgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaac |
106 |
Q |
| |
|
|||| ||||| ||| ||||||| | ||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| || || || |
|
|
| T |
22035719 |
tgcctccggggcatcggttaagttccaaatgaagtaagtttttattaaaaaataatgtaattattacttattaaaaagtgacagtttatatttccaagac |
22035818 |
T |
|
| Q |
107 |
agaaaattctatttatagatttcctaaccggtgccctgaaggtaccggtt |
156 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||| ||||||| |
|
|
| T |
22035819 |
agaaaattctatttatagattcattaaccagtgccccgaagacaccggtt |
22035868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8117577 - 8117451
Alignment:
| Q |
1 |
taatcagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||| | | ||||||||| |||| ||||||||||||||||||||||||| |||||||||| | ||| |||||| || |
|
|
| T |
8117577 |
taatcagtgaccccggggcattggttaaacgctaaatgaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataacaatttatattt |
8117478 |
T |
|
| Q |
101 |
t-aaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
| || ||| |||||||||||||||||| |
|
|
| T |
8117477 |
tcaagaca-taaattctatttatagatt |
8117451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 16861660 - 16861797
Alignment:
| Q |
4 |
tcagtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-ta |
102 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| ||| | || | |||||||||||||||||||||| || |||||||||| |||||||||||| || | |
|
|
| T |
16861660 |
tcagtgcccccaagacatttgttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttcca |
16861759 |
T |
|
| Q |
103 |
aaacagaaaattctatttatagatttcctaaccggtgcc |
141 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
16861760 |
agaca-taaattctatttatagatttcttaaccggtgcc |
16861797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 36636123 - 36636018
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||||| |||| |||| |||| |||||||||| |||||||||||||||||||||||| ||||| ||||||| || || | ||||||||||| |
|
|
| T |
36636123 |
cattggttaagcaccaaataaagtaagtttttattaaaaaataatgtaattattacttaataaaaggtgaccgtttatatctccaagatagaaaattcta |
36636024 |
T |
|
| Q |
118 |
tttata |
123 |
Q |
| |
|
|||||| |
|
|
| T |
36636023 |
tttata |
36636018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 21798798 - 21798873
Alignment:
| Q |
21 |
ttggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||||||||| ||| ||||| | || ||||||| ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
21798798 |
ttggttaagcaccaaaagaagtaattt-ttattaagaagtaatgtaattattacttaatgaaaaatgacagtttata |
21798873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 41434729 - 41434807
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||| || ||| |||| ||||| |||||||||||| |
|
|
| T |
41434729 |
ttattaaaaaataatgtaattattatttgataaaaagtgacagtttatatttctaagacag-aaattatatttatagatt |
41434807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 19689502 - 19689575
Alignment:
| Q |
23 |
ggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||| ||| ||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
19689502 |
ggttaaacaccaaatgaagtaagtt-ttattaaaaagtaatgtaattattatttaatacgaagtgatagtttata |
19689575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 16563584 - 16563469
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
||||||||| ||| |||| || | |||| ||||||||||||||||||||||||| ||| | |||| | | |||||||| || || | | |||||||||| |
|
|
| T |
16563584 |
attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat |
16563485 |
T |
|
| Q |
119 |
ttatagatttcctaac |
134 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
16563484 |
ttatacatttcttaac |
16563469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 16602078 - 16602193
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
||||||||| ||| |||| || | |||| ||||||||||||||||||||||||| ||| | |||| | | |||||||| || || | | |||||||||| |
|
|
| T |
16602078 |
attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat |
16602177 |
T |
|
| Q |
119 |
ttatagatttcctaac |
134 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
16602178 |
ttatacatttcttaac |
16602193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 38320236 - 38320125
Alignment:
| Q |
17 |
gacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattc |
115 |
Q |
| |
|
|||||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||| |
|
|
| T |
38320236 |
gacattagttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacagtttatatttccaagacagaaaattc |
38320137 |
T |
|
| Q |
116 |
tatttatagatt |
127 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38320136 |
tatttatagatt |
38320125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 31647707 - 31647827
Alignment:
| Q |
7 |
gtgcccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaa |
105 |
Q |
| |
|
||||||||| | ||||||||||||| ||| ||| | |||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||| | |
|
|
| T |
31647707 |
gtgcccccgaggtattggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtgatagtttatatttctaaga |
31647806 |
T |
|
| Q |
106 |
cagaaaattctatttatagatt |
127 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
31647807 |
cag-aaattctatttatagatt |
31647827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 31242037 - 31241958
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
31242037 |
ttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagatt |
31241958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 19147267 - 19147147
Alignment:
| Q |
15 |
gggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaat |
113 |
Q |
| |
|
|||| |||| |||||||| ||| ||||| |||| ||||||| ||||||||||||||||| || |||||||||||||||||||| ||| || |||| |||| |
|
|
| T |
19147267 |
gggatattgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagtttatattttcaagacag-aaat |
19147169 |
T |
|
| Q |
114 |
tctatttatagatttcctaacc |
135 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
19147168 |
tctacttatagatttcttaacc |
19147147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 38319606 - 38319547
Alignment:
| Q |
69 |
tattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctatttatagatt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
38319606 |
tattacttaataaaaagtgacagtttatattttcaaaacagaaaattctatttatagatt |
38319547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 47397604 - 47397724
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
||||||||||||| ||| | ||| | || ||||| ||||||||| ||||||||| || |||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
47397604 |
attggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagtttatatttctaaaatag-aaattctat |
47397702 |
T |
|
| Q |
119 |
ttatagatttcctaaccggtgc |
140 |
Q |
| |
|
||||||||| | ||||| |||| |
|
|
| T |
47397703 |
ttatagattccttaaccagtgc |
47397724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 54248998 - 54249099
Alignment:
| Q |
38 |
gaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacagaaaattctatttatagatttcctaaccgg |
137 |
Q |
| |
|
||||| |||| |||||||||| || ||||||||| |||| ||||||| | |||||||||| ||| ||| ||||||||||| |||||||| ||||||| |
|
|
| T |
54248998 |
gaagtaagtttttattaaaaaatattgtaattatcacttgataaaaaataacagtttatatttttaaaatataaattctatttttagatttcttaaccgg |
54249097 |
T |
|
| Q |
138 |
tg |
139 |
Q |
| |
|
|| |
|
|
| T |
54249098 |
tg |
54249099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 20542774 - 20542717
Alignment:
| Q |
11 |
ccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaat |
68 |
Q |
| |
|
||||||| |||||||||||||| ||| ||| | |||| ||||||||||||||| |||| |
|
|
| T |
20542774 |
ccccggggcattggttaagcaccaaaagaattaagtttttattaaaaagtaatataat |
20542717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 51100111 - 51100074
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagt |
86 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
51100111 |
ttattaaaaagtagtgtaattattacttaatcaaaagt |
51100074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0886 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0886
Description:
Target: scaffold0886; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 1190 - 1110
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacagaaaattctatttatagatttc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||| ||||| |
|
|
| T |
1190 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattttcaagaaaaaaattctatttataaatttc |
1110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 21809921 - 21809805
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattcta |
117 |
Q |
| |
|
|||||||||||| | |||| || | |||| |||||||||||||| ||||||||||||| ||||||||||||| |||||| || ||| ||| | ||||||| |
|
|
| T |
21809921 |
cattggttaagcgctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagaca-acaattcta |
21809823 |
T |
|
| Q |
118 |
tttatagatttcctaacc |
135 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
21809822 |
tttatagatttcttaacc |
21809805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 17506294 - 17506386
Alignment:
| Q |
49 |
ttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacagaaaattctatttatagatttcctaaccggtgcc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||| |||||||||||||| ||||| ||||| |
|
|
| T |
17506294 |
ttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttccaaaatataaattatatttatagatttcttaaccagtgcc |
17506386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 4803147 - 4803262
Alignment:
| Q |
13 |
ccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaat-aaaaagtgacagtttatactttaaa-acagaa |
110 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||| | || ||| |||||||||||||||||||||||| || ||||||| ||||||||| || ||| |||| | |
|
|
| T |
4803147 |
ccggggcatcggttaagcaccaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaaagtagcagtttatatttcaaacacag-a |
4803245 |
T |
|
| Q |
111 |
aattctatttatagatt |
127 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4803246 |
aattctatttatagatt |
4803262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 12838592 - 12838530
Alignment:
| Q |
59 |
gtaatgtaattattacttaataaaaagtgacagtttata-ctttaaaacagaaaattctattt |
120 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
12838592 |
gtaatgtaattattatttgatgaaaagtgacagtttatagctccaaaacagaaaattctattt |
12838530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 10008188 - 10008269
Alignment:
| Q |
17 |
gacattggttaagca-caaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||| |||||||||||| |||||||||||||| || |||||| || ||||||| |
|
|
| T |
10008188 |
gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttata |
10008269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 22548 - 22461
Alignment:
| Q |
10 |
cccccgggacattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttata |
97 |
Q |
| |
|
|||||| | |||||||||||||| ||| ||||| |||| |||||||| |||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
22548 |
cccccgaggcattggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttata |
22461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 38799 - 38936
Alignment:
| Q |
19 |
cattggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactttaaaacaga-aaattcta |
117 |
Q |
| |
|
||||||||||| | |||| || | |||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||| || | | |||||||| |
|
|
| T |
38799 |
cattggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgacagtttata-tttccaagatataaattcta |
38897 |
T |
|
| Q |
118 |
tttatagatttcctaaccggtgccctgaaggtaccggtt |
156 |
Q |
| |
|
||||||||||| ||||| || ||| ||||| ||||||| |
|
|
| T |
38898 |
tttatagattttttaaccagtaccccgaaggcaccggtt |
38936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 16944 - 16838
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatacttt-aaaacagaaaattctat |
118 |
Q |
| |
|
||||||||||||| ||| ||| | |||| |||||||||| | || |||||||||||| |||||||||||||||||||| ||| || |||| ||| ||||| |
|
|
| T |
16944 |
attggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatattttcaagacag-aaactctat |
16846 |
T |
|
| Q |
119 |
ttatagat |
126 |
Q |
| |
|
|||||||| |
|
|
| T |
16845 |
ttatagat |
16838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 975 - 868
Alignment:
| Q |
21 |
ttggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctatt |
119 |
Q |
| |
|
|||||||| ||| |||| |||| | || |||||| || ||||||||||||||| |||||||||| ||| |||||||| || || ||||||||||||||| |
|
|
| T |
975 |
ttggttaaacactaaataaagtaaatttttattagaatgtaatgtaattattatttaataaaaaatgatagtttatatttccaagacagaaaattctatt |
876 |
T |
|
| Q |
120 |
tatagatt |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
875 |
tatagatt |
868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 52011 - 52131
Alignment:
| Q |
20 |
attggttaagcacaaaatgaagttagttattattaaaaagtaatgtaattattacttaataaaaagtgacagtttatactt-taaaacagaaaattctat |
118 |
Q |
| |
|
||||||||| | | |||| |||| |||| ||||||||||||||||||||||||| || |||||| ||||| |||||| || ||| ||| | |||||||| |
|
|
| T |
52011 |
attggttaaacgctaaataaagtaagtttttattaaaaagtaatgtaattattatttggtaaaaaatgacaatttatatttctaagaca-acaattctat |
52109 |
T |
|
| Q |
119 |
ttatagatttcctaaccggtgc |
140 |
Q |
| |
|
||||||||||| ||||| |||| |
|
|
| T |
52110 |
ttatagatttcttaacccgtgc |
52131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1372 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1372
Description:
Target: scaffold1372; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 1378 - 1330
Alignment:
| Q |
38 |
gaagttagttattattaaaaagtaatgtaattattacttaataaaaagt |
86 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1378 |
gaagtaagtttttattaaaaagaaatgtaattattacttgataaaaagt |
1330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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