View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_59 (Length: 307)
Name: NF14784_low_59
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 33788122 - 33787830
Alignment:
| Q |
1 |
ggctcgtctaagattagttgttagtaaagtgagaatatcaatgtttgatactttaaccgctgtgaatttgttatacatataatatcaaccatagatttgt |
100 |
Q |
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| T |
33788122 |
ggctcgtctaagattagttgttagtaaagtgagaaaatcaatgtttgatactttaaccgctgtgaatttgttatacatataatatcaaccatagatttgt |
33788023 |
T |
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| Q |
101 |
ttatctacgattgatattattcaatttactctcgacaacgagttgctcactttaagaggagtctgatccctgaaatgaacatgtcatgtgtgacaaattt |
200 |
Q |
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| T |
33788022 |
ttatctacgattgatattactcaatttactctcgacaacgagttgctcactttaagaggagtctgatccctgaaatgaacatgtcatgtgtgacaaattt |
33787923 |
T |
|
| Q |
201 |
ctttctattgctgatgtttctttggtaaagagctacttttgtatattcacttgtgtgtgtgcacttcaaaaccattctttcaatgccctttgc |
293 |
Q |
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| T |
33787922 |
ctttctattgctgatgtttctttggtaaagagctacttttgtatattcacttgtgtgtgtgcacttcaaaaccattctttcaatgccctttgc |
33787830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 42947872 - 42947929
Alignment:
| Q |
76 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttactctc |
133 |
Q |
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| T |
42947872 |
catataatatcaaccattgatttgtttatcaacggttgatattactcgttttactctc |
42947929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 12387903 - 12387849
Alignment:
| Q |
76 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttact |
130 |
Q |
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| T |
12387903 |
catataatataaaccgttgatttgtttatcaacgattgatattatttattttact |
12387849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 37951618 - 37951696
Alignment:
| Q |
76 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttactctcgacaacgagttgctcacttta |
154 |
Q |
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|||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||||| | | |||||||||||||||| |
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| T |
37951618 |
catatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaagcgagttgctcacttta |
37951696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 19256980 - 19257029
Alignment:
| Q |
74 |
tacatataatatcaaccatagatttgtttatctacgattgatattattca |
123 |
Q |
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| T |
19256980 |
tacatataatatcaaccattgatttgtatatccacggttgatattgttca |
19257029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 39432797 - 39432725
Alignment:
| Q |
78 |
tataatatcaaccatagatttgtttatctacgattgatattattcaatttactctcgacaacgagttgctcac |
150 |
Q |
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| T |
39432797 |
tataatatcgaccaaatatttatttatcaacggttgatattactcactttactctctacagtgagttgctcac |
39432725 |
T |
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