View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_60 (Length: 306)
Name: NF14784_low_60
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 126 - 285
Target Start/End: Complemental strand, 47118613 - 47118454
Alignment:
| Q |
126 |
ttttgatatcacaatttctatgcctttttctcttgtccttgccttatttatacaaatctacatgcctattttctatattatcccttttaactctttgact |
225 |
Q |
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| T |
47118613 |
ttttgacatcacaatttctatgcctttttctcttgtcctttccttatttatacaaatctacatgcctatttcctatattattccttttaactctttgact |
47118514 |
T |
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| Q |
226 |
cattacatacgcgtaacttgtgactcattacacacgattcaattcttccctaactctttg |
285 |
Q |
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| T |
47118513 |
cattacatactcgtaactcgtgactcattacacatgattcaattcttccctaactctttg |
47118454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 47118726 - 47118659
Alignment:
| Q |
13 |
aggatccttaaacagttttattgaattgatgaaataaaataagtttcataacttgaatgattacaata |
80 |
Q |
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| T |
47118726 |
aggatccttaaacagttttattgaattgatgaaataaaataagtttcataacttgaatgattacaata |
47118659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 30174280 - 30174347
Alignment:
| Q |
16 |
atccttaaacagttttattgaattgatgaaataaaataagtttcata---acttgaatgattacaata |
80 |
Q |
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| T |
30174280 |
atccttaaactgtttaattgaattgatgaagtaaaataagtttcaaagctacttaaatgattacaata |
30174347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 43820928 - 43820888
Alignment:
| Q |
185 |
acatgcctattttctatattatcccttttaactctttgact |
225 |
Q |
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| T |
43820928 |
acattcctattttctatattatctcttttaactctttgact |
43820888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 45811127 - 45811174
Alignment:
| Q |
16 |
atccttaaacagtt-ttattgaattgatgaaataaaataagtttcata |
62 |
Q |
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| T |
45811127 |
atccttaaactgttattattgaattgatgaagtaaaataagtttcata |
45811174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 41380695 - 41380653
Alignment:
| Q |
16 |
atccttaaacagttttattgaattgatgaaataaaataagttt |
58 |
Q |
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| T |
41380695 |
atccttaaatggttttattgaattgatgaagtaaaataagttt |
41380653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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