View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_64 (Length: 299)
Name: NF14784_low_64
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_64 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 41123715 - 41123997
Alignment:
| Q |
17 |
acctatttgtataattggtggagtctctatagctcgaatgtgattctaagtaattggtggtttggagtcttactattagatggagaaactgtttgcagtc |
116 |
Q |
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| T |
41123715 |
acctatttgtataattggtggagtctctatagctcgaatgtgattctaagtaattgatggtttggagtcttactattagatggagaaactgtttgcagtc |
41123814 |
T |
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| Q |
117 |
atatgagtttttaagtttccaacatctatagcgatagggaagacaattattgtacttcttctcatggctctcattggtgctcaatcactcctaatttgtt |
216 |
Q |
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| T |
41123815 |
atatgagtttttaagtttccaacatctatagccatagggaagacaattattgtacttcttctcatggctctcattggtgctcaatcactcctaatttgtt |
41123914 |
T |
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| Q |
217 |
gttgaaaacatctttaaaaatagggttatgctccctaattaccgttgccataagtttctctgtatcttttttgctaagtttct |
299 |
Q |
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| T |
41123915 |
gttgaaaacatctttaaaaatagggttatgctccctaattaccgttgccataagtttctctatatcttttttgctaagtttct |
41123997 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 46453377 - 46453454
Alignment:
| Q |
186 |
ctcattggtgctcaatcactcctaattt-gttgttgaaaacatctttaaaaatagggttatgctccctaattaccgtt |
262 |
Q |
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|||||||||| || |||||||| ||||| ||||||||| ||| || ||||||| || |||||||||||||||||||| |
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| T |
46453377 |
ctcattggtggtcgatcactccaaattttgttgttgaagtcattttaaaaaatatggctatgctccctaattaccgtt |
46453454 |
T |
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