View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_67 (Length: 297)
Name: NF14784_low_67
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 41296967 - 41297232
Alignment:
| Q |
28 |
tcattatctaccaaaatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaatt |
127 |
Q |
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| T |
41296967 |
tcattatctaccaaaatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaatt |
41297066 |
T |
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| Q |
128 |
ttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgta |
227 |
Q |
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| T |
41297067 |
ttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtc |
41297166 |
T |
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| Q |
228 |
accgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctgatattcttcg |
293 |
Q |
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| T |
41297167 |
acagttaatggagttggaattgctcttgagttatcttatgttctcatttatttctggtattcttcg |
41297232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 72 - 293
Target Start/End: Original strand, 41306873 - 41307094
Alignment:
| Q |
72 |
ttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttt |
171 |
Q |
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| T |
41306873 |
ttaattttcagggttacatttaaaagagtaataaggaagaaaagcaccgaggaattttcatgcattccttacataattggattgttgaattgtcttcttt |
41306972 |
T |
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| Q |
172 |
tcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttct |
271 |
Q |
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| T |
41306973 |
tcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttct |
41307072 |
T |
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| Q |
272 |
catttatttctgatattcttcg |
293 |
Q |
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| T |
41307073 |
tatatacttctggtattcttcg |
41307094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 9612269 - 9612061
Alignment:
| Q |
84 |
gttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatg |
183 |
Q |
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||||| || ||||| || |||||||| |||||||| |||||||||||||| |||||||||| || ||| | ||||| ||||| |||||||| ||||||| |
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| T |
9612269 |
gttactttcaaaagggtgataaggaaaaaaagcactgaggaattttcatgtattccttacactataggactattgaactgtctccttttcacttggtatg |
9612170 |
T |
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| Q |
184 |
ggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctg |
283 |
Q |
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| T |
9612169 |
gattgcctattgtaagtaacaagtgggaaaattttcctcttgtcactgttaatggagttggaattgttttggagctagcttatgttctcatttatttttg |
9612070 |
T |
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| Q |
284 |
atattcttc |
292 |
Q |
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|||||||| |
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| T |
9612069 |
gtattcttc |
9612061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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