View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_low_7 (Length: 528)
Name: NF14784_low_7
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_7 |
 | |
|
| [»] chr3 (11 HSPs) |
| |
|
| [»] scaffold0554 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 23146176 - 23146694
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | |
|
|
| T |
23146176 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctt |
23146275 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggttaagctaatc |
216 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23146276 |
taccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgtaaagtagctatcaataaggttaagctaatc |
23146375 |
T |
|
| Q |
217 |
caagaatgtcttaagtg-tatataaaaagtcaacatgcatatggcatccaacgctacagatatgacatataagatgtgggaaggttttcaatta------ |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23146376 |
caagaatgtcttaagtgatatataaaaagtcaacatgcatatagcatccaacgctacagatatgacatataagatgtgggaaggttttcaattaaaattt |
23146475 |
T |
|
| Q |
310 |
aaattttactggagtaaacaagtttttctctttgaatgtatttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgttaaggt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23146476 |
aaattttactggagtaaacaagtttttctctttgaatgtatttggaagagattaatttgcttaccaggattatggccttgatattgttttttgttaaggt |
23146575 |
T |
|
| Q |
410 |
aaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23146576 |
aaactcctggttgctaccgtcctcatattttaagagaacgtctatcagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctct |
23146675 |
T |
|
| Q |
510 |
ttatgctcattgatgatgt |
528 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23146676 |
ttatgctcattgatgatgt |
23146694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 23039297 - 23039819
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23039297 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
23039396 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggttaagc----t |
212 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
23039397 |
tatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaaacgtcctgaaaagtagctatcaataaggtcaagcaagct |
23039496 |
T |
|
| Q |
213 |
aatccaagaatgtcttaagtg-tatataaaaagtcaacatgcatatggcatccaacgctacagatatgacatataagatgtgggaaggttttcaat---- |
307 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||| | |||||||| | |||| | | | |||||||||| ||||||||||||||| |
|
|
| T |
23039497 |
aatccaagaatgtctaaagtgatatataaaaagacaacatgcatgtagcatccaatgttacaaacaataaatataagatgcgggaaggttttcaatataa |
23039596 |
T |
|
| Q |
308 |
--taaaattttactggagtaaacaagtttttctctttgaatgtatttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgtta |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23039597 |
atttaaattttactggagtaaacaagtttttctctttgaatgtatttgaaagaggttaatttgcttaccaggattatggccttgatattgttttttgtta |
23039696 |
T |
|
| Q |
406 |
aggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23039697 |
aggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttc |
23039796 |
T |
|
| Q |
506 |
ctctttatgctcattgatgatgt |
528 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23039797 |
ctctttatgctcattgatgatgt |
23039819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 23036426 - 23036942
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||| ||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |
|
|
| T |
23036426 |
aataaatgagttcgttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattcct |
23036525 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggttaagctaatc |
216 |
Q |
| |
|
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||| |||| |
|
|
| T |
23036526 |
taccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatc |
23036625 |
T |
|
| Q |
217 |
caagaatgtcttaagtg-tatataaaaagtcaacatgcatatggcatccaacgctacagatatgacatataagatgtgggaaggttttcaatta------ |
309 |
Q |
| |
|
||||||| | | | | | ||||||||||| |||| | | || |||||||| |||||||| || |||||||||| | | || |||| ||||| |
|
|
| T |
23036626 |
caagaatctttaaggcgatatataaaaagacaactagtagatagcatccaatgctacagagtagagatataagatgcgagcagatttt-aattattcatc |
23036724 |
T |
|
| Q |
310 |
-aaattttactggagtaaacaagtttttc-tctttgaatgtatttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgttaag |
407 |
Q |
| |
|
||||||| || ||||| |||||||| |||| ||| ||||||| | | ||||||| |||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
23036725 |
taaatttttcttttgtaaagtagtttttcttcttcgaa-gtatttgga--aagttaattcgcttaccattattatggccttgatattgttttttgtcaag |
23036821 |
T |
|
| Q |
408 |
gtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcct |
507 |
Q |
| |
|
| || || ||||| || || ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036822 |
gaaaggtcttggtttctgccatcctcgtaatttaagagaacgtctacgagatcttcttctactctaccttgatcatctttggcttttgtgtacttttcct |
23036921 |
T |
|
| Q |
508 |
ctttatgctcattgatgatgt |
528 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23036922 |
ctttatgctcattgatgatgt |
23036942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 23140302 - 23140491
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23140302 |
aataatggagctcgttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcactttcttcattattcttggatccct |
23140401 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggt |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||| |||||| |
|
|
| T |
23140402 |
tatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaacaataactatcactaaggt |
23140491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 23149014 - 23149184
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
23149014 |
aataattgagttcattgatgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctt |
23149113 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaa |
187 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
23149114 |
taccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaa |
23149184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 23032971 - 23033157
Alignment:
| Q |
33 |
gatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctactatt |
132 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |||||||||||| || |
|
|
| T |
23032971 |
gatgtaattttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatc |
23033070 |
T |
|
| Q |
133 |
gcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggttaagctaatccaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
23033071 |
gcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaaaagtagctatcaataaggtcaaccaaatccaa |
23033157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 23017319 - 23017498
Alignment:
| Q |
18 |
ataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccctt |
117 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||| |||||||||||| | ||| || ||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
23017319 |
ataactgagttcatttatgcatttttcatcaacccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcattattcttggattcctt |
23017418 |
T |
|
| Q |
118 |
atcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctat |
197 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
23017419 |
atcatttctatcattgcccaatctgtggtgcttgctgatgtctcacctccaccaccgaaaatgtcctgaaaagtagctat |
23017498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 23024528 - 23024698
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||||||||||||||||| | | |
|
|
| T |
23024528 |
aataattaagttcattgatacaattctcttcaacccttcctttcatattgaaaatctctcgcacctcagcttgtgctttcttcattattcttggattctt |
23024627 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaa |
187 |
Q |
| |
|
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23024628 |
taccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa |
23024698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 369 - 528
Target Start/End: Original strand, 23017869 - 23018028
Alignment:
| Q |
369 |
cttaccaggattatggctttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttcta |
468 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||| | || || |||| ||||| ||||||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
23017869 |
cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatcttctgcta |
23017968 |
T |
|
| Q |
469 |
ctttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
528 |
Q |
| |
|
| | |||||||||| ||||| ||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
23017969 |
cctcaccttgatcacctttgacttttgtgtacttttcccttttatgttcatcaatgatgt |
23018028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 528
Target Start/End: Original strand, 23033453 - 23033625
Alignment:
| Q |
347 |
gtatttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagaga |
446 |
Q |
| |
|
||||||| ||||| ||| | |||||||| |||||| || |||||||||| |||||||||| || || |||| ||||| |||||||||||||||||| |
|
|
| T |
23033453 |
gtatttggaagagtttattacgcttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaagaga |
23033552 |
T |
|
| Q |
447 |
acgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
528 |
Q |
| |
|
| |||||| ||||||||| |||| |||||||| ||| |||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
23033553 |
atgtctaccagatcttctactaccttaccttg---------ggcgtttgtgtactttgcctttttatgctcatcgatgatgt |
23033625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 23140886 - 23141012
Alignment:
| Q |
369 |
cttaccaggattatggctttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttcta |
468 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||| || | |||| | ||||| || ||||||| |||||| ||||| | |||||| ||| |
|
|
| T |
23140886 |
cttaccaggattatggccttgatattgtctttagttaaaaaaaattctttgttgtttccgtcttcgtattttatgagaacatctactatatcttcatctg |
23140985 |
T |
|
| Q |
469 |
ctttaccttgatcatctttggcttttg |
495 |
Q |
| |
|
|| |||||| |||| |||||||||| |
|
|
| T |
23140986 |
attcaccttggtcatagttggcttttg |
23141012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 21780069 - 21780246
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
21780069 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatccct |
21780168 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagc |
194 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
21780169 |
taccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc |
21780246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 347 - 528
Target Start/End: Original strand, 21780528 - 21780709
Alignment:
| Q |
347 |
gtatttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagaga |
446 |
Q |
| |
|
||||||| ||||| |||||| |||||||| |||||||| |||||||||| ||||||||||| ||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
21780528 |
gtatttggaagagattaattggcttaccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagaga |
21780627 |
T |
|
| Q |
447 |
acgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
528 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||| | |||||||| |||| |||||||||| || |||||||||| |
|
|
| T |
21780628 |
acgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgt |
21780709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 6498 - 6290
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||| |||| |||| | | ||||| |||| ||||||| |||| |||||| ||||||||||||| ||||| |
|
|
| T |
6498 |
aataattgagtttgctaatgtaattttcatcaacctttccattcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctccct |
6399 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgaaaagtagctatcaataaggttaagctaatc |
216 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||| || |||||| |
|
|
| T |
6398 |
tatcatttctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaatgtcctaaaaagtagctatcgataaggtcaaactaatc |
6299 |
T |
|
| Q |
217 |
caagaatgt |
225 |
Q |
| |
|
||| |||| |
|
|
| T |
6298 |
taaggatgt |
6290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 5919 - 5802
Alignment:
| Q |
350 |
tttgaaagaggttaatttgcttaccaggattatggctttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacg |
449 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| |||||||||||||||| ||||||||||| |||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
5919 |
tttgaaagaggttagtatgcttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacg |
5820 |
T |
|
| Q |
450 |
tctacgagatcttcttct |
467 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
5819 |
tctaatagatcttcttct |
5802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 12610161 - 12610315
Alignment:
| Q |
17 |
aataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccct |
116 |
Q |
| |
|
||||| |||||||||| || |||||||| ||||| |||||||||| ||||| | ||||| ||||||||||| ||||||||||| | |||| |||||| |
|
|
| T |
12610161 |
aataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatccct |
12610260 |
T |
|
| Q |
117 |
tatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagca |
171 |
Q |
| |
|
|| || ||| ||||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
12610261 |
taccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagca |
12610315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 12637312 - 12637426
Alignment:
| Q |
75 |
tctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcagca |
174 |
Q |
| |
|
|||||| |||| ||| ||||||||||| | |||||||||||||| | ||| | ||||||||| ||||||| | | |||||| |||||||||||| || |
|
|
| T |
12637312 |
tctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcacca |
12637411 |
T |
|
| Q |
175 |
aaaatgtcctgaaaa |
189 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
12637412 |
atgatgtcctgaaaa |
12637426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 15885650 - 15885531
Alignment:
| Q |
73 |
tctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctactattgcccaatctatggtgcttgctgatgtctcacctccagcag |
172 |
Q |
| |
|
||||| || |||||||| ||||||||||| | |||| |||||||| || ||| | ||||||||| |||||||| | ||||| || ||||||||| |
|
|
| T |
15885650 |
tctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
15885551 |
T |
|
| Q |
173 |
caaaaatgtcctgaaaagta |
192 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
15885550 |
caaacatgtcctgaaaagta |
15885531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University