View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_71 (Length: 289)
Name: NF14784_low_71
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 17890958 - 17890699
Alignment:
| Q |
14 |
cacagatacatactataaaggattgaccccaaatgttcccaacgacacctaagagggcacatggggaagagccaataaatttcaacaagaacctttattt |
113 |
Q |
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| T |
17890958 |
cacacatacatactataaaggattgaccccaaatgttcccaacgacacctaagagggcacatggggaagagccaataaatttcaacaagaacctttattt |
17890859 |
T |
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| Q |
114 |
tcaattggattaaatttggatataatttagataatatatacttctttgtggttcaatttggacacgtataatggattagaggtagatggttttagaaaat |
213 |
Q |
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| T |
17890858 |
tcaattggattaaatttggatataatttagataatatatacttctttgtggttcaatttggacacgtataatggattagaggtatatggttttagaaaat |
17890759 |
T |
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| Q |
214 |
tgtagattaagatggtccaatttagatgccgtattcgaccatgcatgtgagagacctaatt |
274 |
Q |
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| T |
17890758 |
tgtagatt-agatggtccaatttagatgccgtattcgaccatgcatgtgcgagacctaatt |
17890699 |
T |
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