View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_72 (Length: 289)
Name: NF14784_low_72
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 45846400 - 45846654
Alignment:
| Q |
17 |
gagaggattgagtaaccggtaatgttcgcaaagccgacagcgagtgaaccgccggctaaggcaagttcgccgaggtgaccaagaaagagcatggagatca |
116 |
Q |
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| T |
45846400 |
gagaggattgagtaaccggtaatgttcgcaaagccgaccgcgagtgaaccgccggctaaggcaagttcgccgaggtgaccaagaaagagcatggagatca |
45846499 |
T |
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| Q |
117 |
ttgaacgacaatagagtaagagaccggtgaaaatcatgggaaaagcaattttggatatagaaataatttctttgaaggtagctctaagatgggttttttg |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45846500 |
ttgaacgacaatagagtaaaagaccggtgaaaatcatgggaaaagcaattttggatatagaaataacttctttgaaggtagctctaagatgggttttttg |
45846599 |
T |
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| Q |
217 |
gaattgtgttgttggattttctatgtttatgtctttttggataagtggattggtc |
271 |
Q |
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| T |
45846600 |
gaattgtgttgttggattttctatgtttatgtctttttggataagtggattggtc |
45846654 |
T |
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