View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_75 (Length: 286)
Name: NF14784_low_75
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 76 - 255
Target Start/End: Original strand, 12918188 - 12918367
Alignment:
| Q |
76 |
attcaatgaagaagttggagaaaatgtactaatgctatgtgcaaatatatcaccaataacaaaatggattaaattaattcatatgaatgagtaaagatat |
175 |
Q |
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| T |
12918188 |
attcaatgaagaagttggagaaaatctactaatgttatgtgaaaatatatcaccaataacaaaatggattaaattaattcatatgaatgagtaaagatat |
12918287 |
T |
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| Q |
176 |
ttacaatataaatcaataataatcctgagatcattaaaacttagtttaaatttgttttttgtcgtcactaatatatcacc |
255 |
Q |
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| T |
12918288 |
ttacaatataaatcaataataatcctgagatcattaaaacttagtttaaatttgttttttgtcgtcacaaatatatcacc |
12918367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 12928162 - 12927984
Alignment:
| Q |
74 |
ggattcaatgaagaagttggagaaaatgtactaatgctatgtgcaaatatatcaccaataacaaaatggattaaattaattcatatgaatgagtaaagat |
173 |
Q |
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| T |
12928162 |
ggattcaatgaagaagttggcgaaaatctatatatgctatgtgcaatcgcat-agcaataacaaattg-attaagttaattcctatgaatgtgtaaagat |
12928065 |
T |
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| Q |
174 |
atttacaatataaatcaataataatcctgagatcattaaaacttagtttaaatttgttttttgtcgtcactaatatatcacc |
255 |
Q |
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| T |
12928064 |
atttacaatataaatcaatgataatcctgagatcatgaaatctt-gtttaaattttttttttgtcctcacaaatatatcacc |
12927984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 12918080 - 12918137
Alignment:
| Q |
7 |
gaaattccttctccaaaatcacatgcatattccaaatcttctgctggcattgtctcaa |
64 |
Q |
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| T |
12918080 |
gaaattccttctccaaaatcgcatgcatattccaaatcttctactggcattgtctcaa |
12918137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 12911622 - 12911583
Alignment:
| Q |
82 |
tgaagaagttggagaaaatgtactaatgctatgtgcaaat |
121 |
Q |
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| T |
12911622 |
tgaagaagttggggaaaatctactaatgctatgtgcaaat |
12911583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 12911586 - 12911533
Alignment:
| Q |
185 |
aaatcaataataatcctgagatcattaaaacttagtttaaatttgttttttgtc |
238 |
Q |
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| T |
12911586 |
aaatcaattataatcataagatcattacagcttagtttaaatatgttttttgtc |
12911533 |
T |
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