View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_76 (Length: 284)
Name: NF14784_low_76
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 28342810 - 28342639
Alignment:
| Q |
102 |
ggtgttggtctgtaagagattacactgttgtgttgaaccgtgagagattgcaattatgtattttggttcacaagagaatacacattatagaatgagttat |
201 |
Q |
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| T |
28342810 |
ggtgttggtcggtaagagattacactgttgtgttgatccgtgagagattgcaattatgtattttggttcataagataatacacactatagaaggagttat |
28342711 |
T |
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| Q |
202 |
cctacaaccctctgcgttttcctcgctcttcannnnnnnnaccatcttcttggtaaattatcatcttcttga |
273 |
Q |
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| T |
28342710 |
cctacaaccctctgcgttttcttcgctcttcattttttttaccatcttcttggtaaattatcatcttcttga |
28342639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28342949 - 28342815
Alignment:
| Q |
1 |
aacatatgcaccacgtttggattatgatttttattttatatgctggattaatatgtaaattgttgcattagtgtaaatggagtat----------tcaat |
90 |
Q |
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| T |
28342949 |
aacatatgaaccacgtttggattatgatttttattatatatgctggattaatatgtaaattgttgcattagcgtaaatggagtataatacacttatcaat |
28342850 |
T |
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| Q |
91 |
tttatagtaaaggtgttggtctgtaagagattaca |
125 |
Q |
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| T |
28342849 |
tttatagtaaaggtgttggtctgtaagagattaca |
28342815 |
T |
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