View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_79 (Length: 277)
Name: NF14784_low_79
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 28310949 - 28311192
Alignment:
| Q |
19 |
ctctacatccccaacattcaaaatgtaatggtccaagggtaatatcctttttccctgttcatctgtaaagttgaagtgttcacaaggatcaaccaaaatg |
118 |
Q |
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| T |
28310949 |
ctctacatccccaacattcaaaatgtaatggtccaagggtaatatcctttttccctgttcatctgtaaagttgaagtgttcacaaggatcaaccaaaatg |
28311048 |
T |
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| Q |
119 |
tttatttcaatagatttgttgaaaatagtatgcagacaactgaactcaacaatttggatttccggagaagatgtgtaactttaggccatttagacaacaa |
218 |
Q |
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| T |
28311049 |
tttgtttcaataaatttgttggaaatagtatgcagacaactgaactcaacaatctggatttccggagaacatgtgtaactttaggccatttagacaacaa |
28311148 |
T |
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| Q |
219 |
catcacaacatgacttccatctaattaaatcaccaatgttcatc |
262 |
Q |
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| T |
28311149 |
catcacaacatgacttccatctaattaaatcaccgatgttcatc |
28311192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 28306210 - 28306385
Alignment:
| Q |
67 |
ttttccctgttcatctgtaaagttgaagtgttcacaaggatcaaccaaaatgtttatttcaatagatttgttgaaaatagtatgcagacaactgaactca |
166 |
Q |
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| T |
28306210 |
ttttccatgttcacatgcaaagttgaagtgttcacaaggataaactaaaatgcttgtttcaatagatttgttagaaatagtatgcacatgactgaaccca |
28306309 |
T |
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| Q |
167 |
acaatttggatttccggagaagatgtgtaactttaggccatttagacaacaacatcacaacatgacttccatctaa |
242 |
Q |
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| T |
28306310 |
acaagctgattttttggagaacatttataactttaggccatttagagaacaacatcacaacatgacttccatctaa |
28306385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 13197642 - 13197425
Alignment:
| Q |
23 |
acatccccaacattcaaaatgtaatggtccaagggtaatatcctttttccctgttcatctgtaaagttgaagtgttcacaaggatcaaccaaaatgttta |
122 |
Q |
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| T |
13197642 |
acatcccctacgttcaaaatatgattgcccaagggcaatatcctttttccttgttcatctgcaaagctaaagtgttcacaaggatccgccaaaatacttg |
13197543 |
T |
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| Q |
123 |
tttcaatagatttgttgaaaatagtatgcagacaactgaactcaacaatttggatttccggagaa-gatgtgtaactttaggccatttagacaacaacat |
221 |
Q |
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| T |
13197542 |
tttcaattgatttgttagaaacagtatgcagacgactgggtccgacaagctgggattccggagaaccttgtatatttttaggccatttagagaacaacat |
13197443 |
T |
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| Q |
222 |
cacaacatgacttccatc |
239 |
Q |
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| T |
13197442 |
caccacatgacttccatc |
13197425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 28305973 - 28306013
Alignment:
| Q |
22 |
tacatccccaacattcaaaatgtaatggtccaagggtaata |
62 |
Q |
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| T |
28305973 |
tacatcccctacattcaaaatgtaatggcccaatggtaata |
28306013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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