View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_8 (Length: 512)
Name: NF14784_low_8
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 20140913 - 20140423
Alignment:
| Q |
18 |
atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg |
117 |
Q |
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| T |
20140913 |
atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg |
20140814 |
T |
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| Q |
118 |
gtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt |
217 |
Q |
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| T |
20140813 |
gtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt |
20140714 |
T |
|
| Q |
218 |
tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactg |
317 |
Q |
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| T |
20140713 |
tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactg |
20140614 |
T |
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| Q |
318 |
tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg |
417 |
Q |
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| T |
20140613 |
tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg |
20140514 |
T |
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| Q |
418 |
atttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
508 |
Q |
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| T |
20140513 |
atttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
20140423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 44318328 - 44317838
Alignment:
| Q |
18 |
atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg |
117 |
Q |
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| T |
44318328 |
atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg |
44318229 |
T |
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| Q |
118 |
gtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt |
217 |
Q |
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| T |
44318228 |
gtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt |
44318129 |
T |
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| Q |
218 |
tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactg |
317 |
Q |
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| T |
44318128 |
tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactg |
44318029 |
T |
|
| Q |
318 |
tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg |
417 |
Q |
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| T |
44318028 |
tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg |
44317929 |
T |
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| Q |
418 |
atttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
508 |
Q |
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| T |
44317928 |
atttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
44317838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 428 - 508
Target Start/End: Complemental strand, 29632351 - 29632271
Alignment:
| Q |
428 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
508 |
Q |
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| T |
29632351 |
catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatg |
29632271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 508
Target Start/End: Complemental strand, 16320450 - 16320370
Alignment:
| Q |
428 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
508 |
Q |
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||||||||||||||||||| |||| | |||||||||| |||||||| || |||||||||| |||||||||| ||||||| |
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| T |
16320450 |
catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatg |
16320370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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