View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_83 (Length: 264)

Name: NF14784_low_83
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_83
NF14784_low_83
[»] chr3 (4 HSPs)
chr3 (140-194)||(50515533-50515587)
chr3 (145-212)||(10179104-10179171)
chr3 (145-212)||(54948947-54949014)
chr3 (115-145)||(9716799-9716829)
[»] chr8 (2 HSPs)
chr8 (141-247)||(44218232-44218338)
chr8 (115-144)||(13029505-13029534)
[»] chr7 (1 HSPs)
chr7 (145-212)||(47936146-47936213)
[»] chr6 (1 HSPs)
chr6 (145-212)||(16853685-16853752)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 50515533 - 50515587
Alignment:
Q  140 aaaatgagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtga 194  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  50515533 aaaatgagtagaaaatgaatgtgaggtaagtggttgttataaagggtgagagtga 50515587  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 10179104 - 10179171
Alignment:
Q  145 gagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtgagtgtgaagaatgatgcac 212  Q
    |||||||||||||||||| ||||||||||| | ||||||||||| || || |||||| ||| ||||||    
T  10179104 gagtagaaaatgaatgtggggtaagtggtgtttataaagggtgaaagggaatgtgaaaaattatgcac 10179171  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 54948947 - 54949014
Alignment:
Q  145 gagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtgagtgtgaagaatgatgcac 212  Q
    |||||||||||||||||| ||||||||||| | ||||||||||| || || |||||| ||| ||||||    
T  54948947 gagtagaaaatgaatgtggggtaagtggtgtttataaagggtgaaagggaatgtgaaaaattatgcac 54949014  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 9716829 - 9716799
Alignment:
Q  115 cactctaagatttagtataattgtcaaaatg 145  Q
    |||||||||||||||||||||||||||||||    
T  9716829 cactctaagatttagtataattgtcaaaatg 9716799  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 44218338 - 44218232
Alignment:
Q  141 aaatgagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtgagtgtgaagaatgatgcacacgagttttccaatttgtaggttataaa 240  Q
    |||| ||| |||||||||||||  ||||||| |||| ||||||||||||||||| |||||| ||| |||| |   | ||||| |||||||| ||||||||    
T  44218338 aaataagttgaaaatgaatgtggagtaagtgatggttataaagggtgagagtgaatgtgaaaaatcatgctctaaatttttctaatttgtatgttataaa 44218239  T
Q  241 tcaaaaa 247  Q
    | |||||    
T  44218238 taaaaaa 44218232  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 13029505 - 13029534
Alignment:
Q  115 cactctaagatttagtataattgtcaaaat 144  Q
    ||||||||||||||||||||||||||||||    
T  13029505 cactctaagatttagtataattgtcaaaat 13029534  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 47936146 - 47936213
Alignment:
Q  145 gagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtgagtgtgaagaatgatgcac 212  Q
    |||||||||||||||||| ||||||||||| | ||||||||||| || || |||||| ||| ||||||    
T  47936146 gagtagaaaatgaatgtggggtaagtggtgtttataaagggtgaaagggaatgtgaaaaattatgcac 47936213  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 16853752 - 16853685
Alignment:
Q  145 gagtagaaaatgaatgtgaggtaagtggtggtcataaagggtgagagtgagtgtgaagaatgatgcac 212  Q
    |||||||||||||||||| ||||||||||| | ||||||||||| || || |||||| ||| ||||||    
T  16853752 gagtagaaaatgaatgtggggtaagtggtgtttataaagggtgaaagggaatgtgaaaaattatgcac 16853685  T

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