View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_92 (Length: 248)

Name: NF14784_low_92
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_92
NF14784_low_92
[»] chr8 (7 HSPs)
chr8 (1-181)||(15348435-15348615)
chr8 (53-164)||(12199897-12200008)
chr8 (53-164)||(12444325-12444436)
chr8 (37-128)||(4032277-4032368)
chr8 (49-139)||(12194916-12195006)
chr8 (49-139)||(12439344-12439434)
chr8 (188-237)||(15272044-15272096)
[»] chr4 (36 HSPs)
chr4 (4-167)||(7770991-7771154)
chr4 (4-163)||(48170914-48171076)
chr4 (13-167)||(48735649-48735806)
chr4 (13-138)||(48862857-48862985)
chr4 (38-167)||(45372419-45372548)
chr4 (17-166)||(48870130-48870279)
chr4 (17-166)||(48885816-48885965)
chr4 (11-139)||(7789704-7789832)
chr4 (4-129)||(7904657-7904782)
chr4 (4-135)||(33134151-33134285)
chr4 (11-138)||(45366553-45366683)
chr4 (21-139)||(48891024-48891143)
chr4 (35-137)||(48156786-48156888)
chr4 (13-139)||(7822584-7822710)
chr4 (4-130)||(7877344-7877470)
chr4 (16-164)||(48148022-48148173)
chr4 (4-139)||(7238048-7238183)
chr4 (4-132)||(7774157-7774285)
chr4 (9-129)||(49041471-49041591)
chr4 (13-139)||(7800252-7800378)
chr4 (11-152)||(50668645-50668786)
chr4 (4-138)||(33133653-33133790)
chr4 (5-139)||(7765236-7765370)
chr4 (17-139)||(7813095-7813217)
chr4 (5-139)||(7786058-7786192)
chr4 (37-139)||(7907940-7908042)
chr4 (4-129)||(37827322-37827447)
chr4 (13-153)||(48875447-48875587)
chr4 (19-138)||(45385131-45385249)
chr4 (13-95)||(48852316-48852401)
chr4 (69-137)||(48902567-48902635)
chr4 (36-123)||(49044589-49044676)
chr4 (43-134)||(48898342-48898436)
chr4 (37-151)||(50251169-50251283)
chr4 (16-136)||(47207552-47207672)
chr4 (73-123)||(49048996-49049046)
[»] chr5 (6 HSPs)
chr5 (13-136)||(29712806-29712929)
chr5 (23-138)||(29695768-29695883)
chr5 (4-136)||(29687669-29687801)
chr5 (73-136)||(42562728-42562791)
chr5 (38-139)||(1812040-1812141)
chr5 (74-123)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (13-135)||(24309796-24309918)
chr1 (13-138)||(24340030-24340155)
chr1 (13-130)||(24322086-24322203)
chr1 (24-139)||(24366770-24366885)
chr1 (13-135)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (17-138)||(11878-11999)
[»] chr3 (5 HSPs)
chr3 (13-139)||(11024874-11025000)
chr3 (13-139)||(11015862-11015988)
chr3 (13-139)||(47452247-47452370)
chr3 (46-139)||(11006332-11006425)
chr3 (70-106)||(955615-955651)
[»] chr6 (3 HSPs)
chr6 (21-115)||(21979989-21980083)
chr6 (31-139)||(21015391-21015499)
chr6 (70-130)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (32-163)||(48883373-48883505)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 15348615 - 15348435
Alignment:
Q  1 acctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348615 acctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaa 15348516  T
Q  101 acgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgagataggtaaggtagt 181  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15348515 acgcatttgaaacgtataagagacttcaccggtaacctctctagaatttgaactattaattcatgagacaggtaaggtagt 15348435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 12200008 - 12199897
Alignment:
Q  53 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 152  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  153 ctattaattcat 164  Q
      ||||||||||    
T  12199908 tgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 12444436 - 12444325
Alignment:
Q  53 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 152  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  153 ctattaattcat 164  Q
      ||||||||||    
T  12444336 tgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  37 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttca 128  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||| |||||||| || ||||||||||||||||| ||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 12195006 - 12194916
Alignment:
Q  49 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 139  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12194916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 12439434 - 12439344
Alignment:
Q  49 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 139  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 15272096 - 15272044
Alignment:
Q  188 tttttcttctcagtgcgcttactccctctgcgac---ggtttcttttcttcat 237  Q
    ||||||||||| ||||||||||||||||||||||   ||||||||||||||||    
T  15272096 tttttcttctctgtgcgcttactccctctgcgactttggtttcttttcttcat 15272044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 7771154 - 7770991
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||||| |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  7771154 tatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacg 7771055  T
Q  104 catttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 167  Q
    |||||||||| ||||||||| |||||||| ||||||   |||||||| | ||||| ||||||||    
T  7771054 catttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgag 7770991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 48170914 - 48171076
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 100  Q
    |||| ||| |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| |||||||   |||||||||| ||||||||||||||||    
T  48170914 tatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaa 48171013  T
Q  101 acgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattca 163  Q
    || ||||||||||||| |||||| ||||||| |||||||   |||||||||||||| ||||||    
T  48171014 acacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattca 48171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 48735649 - 48735806
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 109  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||||||||| ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  110 aaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 167  Q
    ||||| |||||||| |||||||||||||||   |||||||||||||| || |||||||    
T  48735749 aaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgag 48735806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 48862985 - 48862857
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 109  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| |||||||   ||||||||||||||||||||||| ||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  110 aaacgtataagagatttcaccggtaacct 138  Q
    ||||| |||||||| ||||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaacct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 45372419 - 45372548
Alignment:
Q  38 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 137  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  138 tctctagaatttgaactattaattcatgag 167  Q
    |   |||||||||||  || ||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgag 45372548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 48870279 - 48870130
Alignment:
Q  17 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 116  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |    
T  48870279 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48870180  T
Q  117 taagagatttcaccggtaacctctctagaatttgaactattaattcatga 166  Q
    ||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48870179 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 48885965 - 48885816
Alignment:
Q  17 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 116  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |    
T  48885965 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48885866  T
Q  117 taagagatttcaccggtaacctctctagaatttgaactattaattcatga 166  Q
    ||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48885865 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 7789832 - 7789704
Alignment:
Q  11 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 110  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  111 aacgtataagagatttcaccggtaacctc 139  Q
    ||| ||||||||| |||||||| ||||||    
T  7789732 aacatataagagacttcaccggcaacctc 7789704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 7904782 - 7904657
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||||||| ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||     
T  7904782 tatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaaca 7904683  T
Q  104 catttgaaacgtataagagatttcac 129  Q
    |||||||||||||||||||| |||||    
T  7904682 catttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 33134151 - 33134285
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 100  Q
    |||| ||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| |||||||   |||||||||||||| |||| |||||||    
T  33134151 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaa 33134250  T
Q  101 acgcatttgaaacgtataagagatttcaccggtaa 135  Q
    |||||||||||||| |||||||| |||||||||||    
T  33134251 acgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 45366553 - 45366683
Alignment:
Q  11 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatt 107  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   ||||||||||||||||||| ||||||||||||| |    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcact 45366652  T
Q  108 tgaaacgtataagagatttcaccggtaacct 138  Q
    |||||||||||||||| ||||| ||||||||    
T  45366653 tgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 48891143 - 48891024
Alignment:
Q  21 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataa 119  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataa 48891044  T
Q  120 gagatttcaccggtaacctc 139  Q
    |||| || |||| |||||||    
T  48891043 gagactttaccgataacctc 48891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 48156786 - 48156888
Alignment:
Q  35 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 134  Q
    ||||||||||||||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T
Q  135 acc 137  Q
    |||    
T  48156886 acc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 7822710 - 7822584
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  ||||||||||||||||||||||| || |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  113 cgtataagagatttcaccggtaacctc 139  Q
    ||||||||| | |||||||| ||||||    
T  7822610 cgtataagatacttcaccggcaacctc 7822584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 7877470 - 7877344
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| |    
T  7877470 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatg 7877371  T
Q  104 catttgaaacgtataagagatttcacc 130  Q
    |||||||||||||||||||| ||||||    
T  7877370 catttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 48148022 - 48148173
Alignment:
Q  16 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| |||||||   |||||||||||||||||||||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  113 cgtataagagatttcaccggtaacctctctagaatttgaactattaattcat 164  Q
    || |||||||| ||||| ||||||||    || ||||||||||| |||||||    
T  48148122 cgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcat 48148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 7238048 - 7238183
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||||| ||||  |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||     
T  7238048 tatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaaca 7238147  T
Q  104 catttgaaacgtataagagatttcaccggtaacctc 139  Q
    ||||||||||  |||||||| ||||| || ||||||    
T  7238148 catttgaaacagataagagacttcactggcaacctc 7238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 7774157 - 7774285
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||||     
T  7774157 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaaca 7774256  T
Q  104 catttgaaacgtataagagatttcaccgg 132  Q
    ||||||||| | |||||||| ||||||||    
T  7774257 catttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 49041471 - 49041591
Alignment:
Q  9 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 108  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcattt 49041570  T
Q  109 gaaacgtataagagatttcac 129  Q
    |||||  |||||||| |||||    
T  49041571 gaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 7800378 - 7800252
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| |||||||||||| || |||||||| || ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  113 cgtataagagatttcaccggtaacctc 139  Q
    ||||||||| | |||||||| ||||||    
T  7800278 cgtataagatacttcaccggcaacctc 7800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 50668786 - 50668645
Alignment:
Q  11 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 110  Q
    ||||||||||||||||||| | |||| |||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  50668786 aaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 50668687  T
Q  111 aacgtataagagatttcaccggtaacctctctagaatttgaa 152  Q
    ||||||||||| ||||||| || |||||| | | ||||||||    
T  50668686 aacgtataagatatttcacgggcaacctcaccaaaatttgaa 50668645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 33133790 - 33133653
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 100  Q
    |||| ||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | |||||   ||||||||||||||||||  |||||||    
T  33133790 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaa 33133691  T
Q  101 acgcatttgaaacgtataagagatttcaccggtaacct 138  Q
    | | |||||||||| |||||||| ||||  ||||||||    
T  33133690 atgaatttgaaacgaataagagacttcattggtaacct 33133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 7765370 - 7765236
Alignment:
Q  5 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 104  Q
    ||||| |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||  ||||||||| ||    
T  7765370 atgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgc 7765271  T
Q  105 atttgaaacgtataagagatttcaccggtaacctc 139  Q
    | ||||||  ||  ||||| |||||||||||||||    
T  7765270 acttgaaaactaagagagacttcaccggtaacctc 7765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 7813217 - 7813095
Alignment:
Q  17 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 116  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || |||||||||||||||||||| || |||||||| || ||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T
Q  117 taagagatttcaccggtaacctc 139  Q
    ||||| | |||||||| ||||||    
T  7813117 taagatacttcaccggcaacctc 7813095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 7786192 - 7786058
Alignment:
Q  5 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 104  Q
    ||||| |||| ||||||||||||| |||    | ||| ||| |||||||||||||| || | |||||||||||||| ||||| |||   |||||||||||    
T  7786192 atgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgc 7786093  T
Q  105 atttgaaacgtataagagatttcaccggtaacctc 139  Q
    |||||||   |||||||||||||||||| ||||||    
T  7786092 atttgaacaatataagagatttcaccggcaacctc 7786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 7908042 - 7907940
Alignment:
Q  37 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 136  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||||| |||  | ||||||||| ||||||| |||||||| |||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  137 ctc 139  Q
    |||    
T  7907942 ctc 7907940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 37827322 - 37827447
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||| ||| ||||| |||||| |||| || ||| |||| |||||||||||||||||| ||||  |||| ||| |||||||  ||||| ||||||||||||    
T  37827322 tatgaacagaattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacg 37827421  T
Q  104 catttgaaacgtataagagatttcac 129  Q
    ||| | |||| ||||||||| |||||    
T  37827422 catgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 48875587 - 48875447
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||||||   ||||||| ||||| | |||||||||||||||||  || |  || || ||||| ||||||||||||||||| |||||||||||||||    
T  48875587 aattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaa 48875488  T
Q  113 cgtataagagatttcaccggtaacctctctagaatttgaac 153  Q
    || || ||||| || || | |||||||   |||||||||||    
T  48875487 cgaattagagacttgactgataacctcagcagaatttgaac 48875447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 45385131 - 45385249
Alignment:
Q  19 acgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtata 118  Q
    ||||| |||||||| ||||| || |||||| ||||||| ||| ||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||||     
T  45385131 acgagggtgtgttgtggcggaaagttgaaa-tgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatg 45385229  T
Q  119 agagatttcaccggtaacct 138  Q
    ||||| || || ||||||||    
T  45385230 agagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 95  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 48902635 - 48902567
Alignment:
Q  69 gatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 137  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 49044589 - 49044676
Alignment:
Q  36 cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 123  Q
    ||||||||| ||||||||||||||| ||||  |  | ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49044589 cggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 48898436 - 48898342
Alignment:
Q  43 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 134  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  48898436 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 50251169 - 50251283
Alignment:
Q  37 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 136  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||||||||  ||||| || |||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaac 50251268  T
Q  137 ctctctagaatttga 151  Q
    ||  ||| |||||||    
T  50251269 ctaactaaaatttga 50251283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 47207672 - 47207552
Alignment:
Q  16 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 115  Q
    |||| |||||||||||  || ||||| || |||||||||||| |  || |  || || ||||| |||||||| |||||||| ||||| |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  116 ataagagatttcaccggtaac 136  Q
    |||||||| ||||||||||||    
T  47207572 ataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 49048996 - 49049046
Alignment:
Q  73 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 123  Q
    ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 29712806 - 29712929
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  113 cgtataagagatttcaccggtaac 136  Q
    || |||||||| ||||||||||||    
T  29712906 cgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29695883 - 29695768
Alignment:
Q  23 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagag 122  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||  |||||||||||||||||||||| |||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  123 atttcaccggtaacct 138  Q
    | || || ||||||||    
T  29695783 acttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 29687801 - 29687669
Alignment:
Q  4 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 103  Q
    |||| ||| ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || |||||||||||||||||||||||     
T  29687801 tatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaaca 29687702  T
Q  104 catttgaaacgtataagagatttcaccggtaac 136  Q
    || ||||| ||||||||||| ||||| ||||||    
T  29687701 cacttgaagcgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  73 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 136  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 1812141 - 1812040
Alignment:
Q  38 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 137  Q
    |||| |||||||||  ||||||| ||||  ||||  |||||||||||||||||  |||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  138 tc 139  Q
    ||    
T  1812041 tc 1812040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 178699 - 178650
Alignment:
Q  74 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 123  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 24309918 - 24309796
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 24309819  T
Q  113 cgtataagagatttcaccggtaa 135  Q
    || |||||||| || ||||||||    
T  24309818 cgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| |||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  113 cgtataagagatttcaccggtaacct 138  Q
    || |||||||| || |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 24322203 - 24322086
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  |||||||||||||||||||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaa 24322104  T
Q  113 cgtataagagatttcacc 130  Q
    || |||||||| ||||||    
T  24322103 cgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 24366885 - 24366770
Alignment:
Q  24 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 123  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| || ||||     
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagt 24366786  T
Q  124 tttcaccggtaacctc 139  Q
    ||  || |||||||||    
T  24366785 ttcaactggtaacctc 24366770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 24415577 - 24415456
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    ||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||    ||||  || |||||||||||||||||||||| |||||||||||||    
T  24415577 aattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaact-ggatttgaaataagagaaaaccaagacttacgaacgcatttgaaa 24415479  T
Q  113 cgtataagagatttcaccggtaa 135  Q
    || |||||||| || ||||||||    
T  24415478 cgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 11999 - 11878
Alignment:
Q  17 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 116  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| |||||||||||| |||||||||| |    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacgga 11900  T
Q  117 taagagatttcaccggtaacct 138  Q
    ||||||| || | |||||||||    
T  11899 taagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 11024874 - 11025000
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  11024874 aattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 11024973  T
Q  113 cgtataagagatttcaccggtaacctc 139  Q
    ||||| ||||| |||||||||||||||    
T  11024974 cgtatgagagacttcaccggtaacctc 11025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 11015862 - 11015988
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||| | |||||||||||||||||||||    
T  11015862 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaa 11015961  T
Q  113 cgtataagagatttcaccggtaacctc 139  Q
    ||||| ||||| |||||||||||||||    
T  11015962 cgtatgagagacttcaccggtaacctc 11015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 47452247 - 47452370
Alignment:
Q  13 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 112  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| |||||| ||| ||| |||||     
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaag 47452343  T
Q  113 cgtataagagatttcaccggtaacctc 139  Q
    |||| |||||| |||||||| ||||||    
T  47452344 cgtacaagagacttcaccggcaacctc 47452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 11006332 - 11006425
Alignment:
Q  46 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 139  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| || |||||||| ||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 11006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 955651 - 955615
Alignment:
Q  70 atcagagataagagaaaaccaagacttacaaacgcat 106  Q
    ||||||||||||||||  |||||||||||||||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcat 955615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 21979989 - 21980083
Alignment:
Q  21 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 115  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||||||||| || |||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 21015499 - 21015391
Alignment:
Q  31 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 130  Q
    |||||| ||||||| |||||||||| |||| ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||  | |||    
T  21015499 tgcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 21015400  T
Q  131 ggtaacctc 139  Q
    |||||||||    
T  21015399 ggtaacctc 21015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  70 atcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 130  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||  ||||| ||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 48883505 - 48883373
Alignment:
Q  32 gcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgca---tttgaaacgtataagagatttca 128  Q
    ||||| |||| ||||||||| || ||||||||||  | || |||||  ||||||||||||| ||||||||| ||   ||||||||||| |||||| ||||    
T  48883505 gcggctgtaagttgaaaatgggattttgcgaagttggtatgagaga--agagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttca 48883408  T
Q  129 ccggtaacctctctagaatttgaactattaattca 163  Q
    |  |||||||| | | ||||||||  |||||||||    
T  48883407 catgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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