View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_94 (Length: 246)

Name: NF14784_low_94
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_94
NF14784_low_94
[»] chr2 (1 HSPs)
chr2 (23-216)||(42246976-42247169)
[»] chr4 (1 HSPs)
chr4 (23-216)||(48206546-48206741)
[»] chr5 (3 HSPs)
chr5 (114-161)||(26911670-26911717)
chr5 (185-216)||(26911743-26911774)
chr5 (31-61)||(26911537-26911567)
[»] scaffold0178 (1 HSPs)
scaffold0178 (31-61)||(1958-1988)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 42246976 - 42247169
Alignment:
Q  23 aaattcatcacatacccattttaattcatccacaaattcatacccattttaaattcagatctacaattcattaagaagnnnnnnngcccatatcatcaat 122  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |||||||||    
T  42246976 aaattcaacacatacccattttaatccatccacaaattcatacccattttaaattcagatctacaattcattaagaagaaaaaaaacccagatcatcaat 42247075  T
Q  123 ccgatccgagttcgaagatgaaggagatcgcttttcatttttttnnnnnnnnnntccaccgctgcaattccttacatgagcttgagagtctttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  42247076 ccgatccgagttcgaagatgaaggagatcgcttttcatttttagaaaaaaaaaatccaccgctgcaattccttacatgagcttgagagtctttg 42247169  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 48206546 - 48206741
Alignment:
Q  23 aaattcatcacatacccattttaattcatccacaaattcatacccattttaaattcagatctacaattcattaagaagnnnnnnngcccatatcatcaat 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||    
T  48206546 aaattcaacacatacccattttaattcatccacaaattcatacccattttaaattcagatctacaattgattaagaagaaaaaaaacccatatcatcaat 48206645  T
Q  123 ccgatccgagttcgaagatgaaggagatcgcttttcattttt--ttnnnnnnnnnntccaccgctgcaattccttacatgagcttgagagtctttg 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||              ||||||||||||||||||||||||||||||||||||||||    
T  48206646 ccgatccgagttcgaagatgaaggagatcgcttttcaattttagaaagaaaaaaaatccaccgctgcaattccttacatgagcttgagagtctttg 48206741  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 26911670 - 26911717
Alignment:
Q  114 atcatcaatccgatccgagttcgaagatgaaggagatcgcttttcatt 161  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26911670 atcatcaatccgatccgagttcgaagacgaaggagatcgctttccatt 26911717  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 26911743 - 26911774
Alignment:
Q  185 tgcaattccttacatgagcttgagagtctttg 216  Q
    ||||||||||||||||||||||||||||||||    
T  26911743 tgcaattccttacatgagcttgagagtctttg 26911774  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 26911537 - 26911567
Alignment:
Q  31 cacatacccattttaattcatccacaaattc 61  Q
    |||||||||||||||||||||||||||||||    
T  26911537 cacatacccattttaattcatccacaaattc 26911567  T

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Target: scaffold0178 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 1988 - 1958
Alignment:
Q  31 cacatacccattttaattcatccacaaattc 61  Q
    |||||||||||||||||||||||||||||||    
T  1988 cacatacccattttaattcatccacaaattc 1958  T

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