View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_97 (Length: 241)
Name: NF14784_low_97
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36753571 - 36753809
Alignment:
| Q |
1 |
caagctgcagctcaagctgctctgacaagtttgtccaatgtttacaaatcaactagaattcattaccggtcatttccaaggaatacattgca------tg |
94 |
Q |
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| T |
36753571 |
caagctgcagctcaagctgctctgacaagtttgtccattgtttacaaatcaactagaattaattaccggtcatttccaaggaatacattgcagcaagatg |
36753670 |
T |
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| Q |
95 |
cttcttttgcatccgatggtggtaatgcttcagattctattcaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtggaaaa |
194 |
Q |
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| T |
36753671 |
cttctgttgcatccgatggtggtaatgcttcagattctatccaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtggaaaa |
36753770 |
T |
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| Q |
195 |
agctatttctgaggttatagacgttcagatgaaaaatat |
233 |
Q |
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| T |
36753771 |
agatatttatgaggttatagacgttcagatgaaaaatat |
36753809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 19123829 - 19124012
Alignment:
| Q |
56 |
gaattcattaccggtcatttccaaggaatacattgca------tgcttcttttgcatccgatggtggtaatgcttcagattctattcaaggatctctatt |
149 |
Q |
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| T |
19123829 |
gaattaattaccgatcatttctaaggaatacattgcagcaagatgcttcagttacatccgatggtggtaatgcttcagattctatccaaggatctctatt |
19123928 |
T |
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| Q |
150 |
gcgtgcaaatttacagcttgagaaggaagaatcagacgtggaaaaagctatttctgaggttatagacgttcagatgaaaaatat |
233 |
Q |
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| T |
19123929 |
ggatgcaaatttacagcttgagaaggaagaatcagatgtggaaaaagctatttctgaggttatagaagttcagatgaaaaatat |
19124012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 54292076 - 54291946
Alignment:
| Q |
92 |
atgcttcttttgcatccgatggtggtaatgcttcagattctattcaaggatctctattgcgtgcaaatttacagcttgagaaggaagaatcagacgtgga |
191 |
Q |
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||||| || |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54292076 |
atgctgctgttgcatccaatggtggtaatgcttcagattctatccaaggatctttattgcgtgcaaatttacagcttgagaaggaagaatcagacgtgga |
54291977 |
T |
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| Q |
192 |
aaaagctatttctgaggttatagacgttcag |
222 |
Q |
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| T |
54291976 |
aaaagcaatttctgaggttacagaagttcag |
54291946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 54292365 - 54292274
Alignment:
| Q |
1 |
caagctgcagctcaagctgctctgacaagtttgtccaatgtttacaaatcaactagaattcattaccggtcatttccaaggaatacattgca |
92 |
Q |
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| T |
54292365 |
caagctgcagctcaagctgctctgacaagtttgtccaatgtttacaaatcaactagaattaattaccggtcatttccaaggaatacattgca |
54292274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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