View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14785_high_9 (Length: 226)

Name: NF14785_high_9
Description: NF14785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14785_high_9
NF14785_high_9
[»] chr5 (3 HSPs)
chr5 (1-175)||(20959927-20960101)
chr5 (176-221)||(21006135-21006180)
chr5 (176-221)||(21011884-21011929)
[»] chr3 (2 HSPs)
chr3 (57-165)||(3180258-3180363)
chr3 (3-48)||(3180356-3180401)
[»] chr8 (4 HSPs)
chr8 (170-221)||(24750107-24750158)
chr8 (175-221)||(24744388-24744434)
chr8 (176-221)||(43579675-43579720)
chr8 (176-221)||(43583590-43583635)
[»] chr6 (2 HSPs)
chr6 (176-221)||(26452309-26452354)
chr6 (175-221)||(26446499-26446545)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 20959927 - 20960101
Alignment:
Q  1 tcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtttgtgatttcattggtttctttctctagcttagtgttccttaaaggcttgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20959927 tcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtttgtgatttcattggtttctttctctagcttagtgttccttaaaggcttgctc 20960026  T
Q  101 gtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttgaaactattatattgtttgtt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  20960027 gtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttgaaacttttatgttgtttgtt 20960101  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 21006135 - 21006180
Alignment:
Q  176 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  21006135 ggcttaatacatacgcaggtcccttaacttattttttcttctcact 21006180  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 21011929 - 21011884
Alignment:
Q  176 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  21011929 ggcttaatacatacgcaggtcccttaacttattttttcttctcact 21011884  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 3180363 - 3180258
Alignment:
Q  57 cattggtttctttctctagcttagtgttccttaaaggcttgctcgtagcttaggttttcataactagttttggttgtaactttttagtgctgatccttga 156  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||| |||||||||   |||||| ||||||||||    
T  3180363 cattggttgctttctctagcttagtgttccttgaaggcttgctggtagctttggtttccataactagtttaggttgtaac---ttagtgttgatccttga 3180267  T
Q  157 aactattat 165  Q
    |||| ||||    
T  3180266 aacttttat 3180258  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 3180401 - 3180356
Alignment:
Q  3 agtatggaggagattcttgggcaggtggctgtcttgtgcattggtt 48  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  3180401 agtatggaggagattctttggcaggtggctgtcttgtgcattggtt 3180356  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 24750158 - 24750107
Alignment:
Q  170 tttgttggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24750158 tttgttggcttaatgcatacgcaagtcccttaacttattttttcttctcact 24750107  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 24744388 - 24744434
Alignment:
Q  175 tggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  24744388 tggcttaatgcatacggaggtcccttaacttattttttcttctcact 24744434  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 43579675 - 43579720
Alignment:
Q  176 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||| |||| ||| ||| ||||||||||||||||||||||||    
T  43579675 ggcttaatacatacgcaagtctcttaacttattttttcttctcact 43579720  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 43583635 - 43583590
Alignment:
Q  176 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  43583635 ggcttaatacatacgcatgtcccttaatttattttttcttctcact 43583590  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 26452354 - 26452309
Alignment:
Q  176 ggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26452354 ggcttaatgcatacgcaggtcccttaacttattttttcttctcact 26452309  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 26446499 - 26446545
Alignment:
Q  175 tggcttaatgcataagcaggtcccttaacttattttttcttctcact 221  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  26446499 tggcttaatgcatacgcatgtcccttaacttattttttcttctcact 26446545  T

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